Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0602
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g11626.1 68415.m01251 hypothetical protein                          31   1.0  
At2g17790.1 68415.m02062 vacuolar protein sorting-associated pro...    28   7.1  
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec...    28   7.1  
At5g14890.1 68418.m01746 NHL repeat-containing protein contains ...    27   9.4  

>At2g11626.1 68415.m01251 hypothetical protein
          Length = 242

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 293 LVLPMFHDRQCPLYVRQAYLSASWDKNIKLVHLDKSAKCRINFNYTNKKTF 445
           L++  +    CP Y R +YL  S D  +K +    ++ CRI  +Y   +TF
Sbjct: 42  LLISFWQGNFCPGYSRVSYLKPSTD--LKPITTSVTSSCRIMLSYRATRTF 90


>At2g17790.1 68415.m02062 vacuolar protein sorting-associated
           protein 35 family protein / VPS35 family protein similar
           to vacuolar protein sorting 35 [Mus musculus]
           GI:11875394; contains Pfam profile PF03635: Vacuolar
           protein sorting-associated protein 35
          Length = 830

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
 Frame = -1

Query: 389 DGQVLYFCPKR--QTSTPA*RKVGTVDHETSAVPM--SVLNKYLFYYALYMNINHISTIN 222
           DG+ +  C KR  + +  A +   T    T +V +   +LNKYL++Y     +  I+  +
Sbjct: 723 DGERVLLCLKRALKIANSAQQVANTARGSTGSVTLFIEILNKYLYFYE--KGVPQITVES 780

Query: 221 EKTIIVIVKQKSN 183
            +++I ++K + +
Sbjct: 781 VESLIKLIKNEES 793


>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
           receptor (PEX7) identical to peroxisomal targeting
           signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
           thaliana]; WD-40 repeat protein family member; contains
           6 WD-40 repeats (PF00400); similar to peroxismal
           targeting signal 2 receptor (PTS2R) (Peroxin-7)
           (PEX7)(SP:O00628) [Homo sapiens]
          Length = 317

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 338 RQAYLSASWDKNIKLVHLDKSAKCR 412
           R ++L++SWD  +KL  +D+ A  R
Sbjct: 119 RDSFLTSSWDDTVKLWAMDRPASVR 143


>At5g14890.1 68418.m01746 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 754

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 698 KNLSFHIN*KGTENQFRATTFYFCSLSWILLRSGSVNFNKNIGMLQTVI 552
           +NL   IN  G  +Q    T Y   L+   +RS  + FNK+ G +   I
Sbjct: 466 RNLRPRINYMGYSSQLPGLTAYCTDLTSYTMRSDHLIFNKSTGSISVHI 514


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,102,573
Number of Sequences: 28952
Number of extensions: 230961
Number of successful extensions: 424
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)