Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0597
         (857 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11090.1 68414.m01270 hydrolase, alpha/beta fold family prote...    32   0.56 
At2g34340.1 68415.m04203 expressed protein contains Pfam profile...    29   3.0  
At4g00740.1 68417.m00101 dehydration-responsive protein-related ...    29   5.2  
At4g02500.1 68417.m00341 galactosyl transferase GMA12/MNN10 fami...    28   9.1  
At3g43320.1 68416.m04579 hypothetical protein                          28   9.1  

>At1g11090.1 68414.m01270 hydrolase, alpha/beta fold family protein
           similar to monoglyceride lipase from [Homo sapiens]
           GI:14594904, [Mus musculus] GI:2632162; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 324

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 43  VFLVFVFARYVASDGDALLKP-CKLGDMQCLSSATEQFLEKTSKGIPQYDIWPIDPLVVT 219
           + L+  FA  +  DG  L+ P CK+ D        +QFL   S+ +P + I P + L+  
Sbjct: 144 ICLLIQFADPLGFDGAVLVAPMCKISDKVRPKWPVDQFLIMISRFLPTWAIVPTEDLLEK 203

Query: 220 SLDV 231
           S+ V
Sbjct: 204 SIKV 207


>At2g34340.1 68415.m04203 expressed protein contains Pfam profile
           PF04520: Protein of unknown function, DUF584
          Length = 136

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 530 ESIGEPKITLSSDLSSALEKDSGNNSLEPDMEPLKTLR 643
           E   E ++  S  LSS L K++ N     DME  KT R
Sbjct: 3   EEFDESEVVFSDGLSSVLHKENENRLFGSDMERKKTRR 40


>At4g00740.1 68417.m00101 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 600

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 16  RDIKMASLKVFLVFVFARYVASDGDALLKPCKLGDMQCLSSATEQFLEKTSKGIPQYDIW 195
           +D + A L+     +    +A DG+ ++    +GD  CL S  E  LE   + +P  D W
Sbjct: 312 QDKEWADLQAVARALCYELIAVDGNTVIWKKPVGD-SCLPSQNEFGLELCDESVPPSDAW 370


>At4g02500.1 68417.m00341 galactosyl transferase GMA12/MNN10 family
           protein low similarity to
           alpha-1,2-galactosyltransferase, Schizosaccharomyces
           pombe [SP|Q09174]
          Length = 461

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 20  TSKWLL*KYSWFLCLLDTWLPM 85
           T  +LL    W L LLDTW PM
Sbjct: 270 TGSFLLRNNQWALDLLDTWAPM 291


>At3g43320.1 68416.m04579 hypothetical protein
          Length = 510

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 512 PETFTCESIGEPKITLSSDLSSALEKD 592
           P+T  CES  E KI + +DL+  L K+
Sbjct: 250 PKTEACESFEEAKILVEADLTKDLPKE 276


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,593,001
Number of Sequences: 28952
Number of extensions: 359201
Number of successful extensions: 796
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)