Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0580
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21297| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   2e-08
SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.26 
SB_2542| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_21297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 23/42 (54%), Positives = 32/42 (76%)
 Frame = +1

Query: 4   ELDSDSEEVKRKRFEKVLELMQKMQDLGQPPTELVGDIGPVP 129
           E   DSE++K+KRF+K++ LMQ+MQ+ GQPP ELVG +   P
Sbjct: 220 EKPDDSEDIKKKRFQKIMSLMQQMQECGQPPEELVGQMETGP 261


>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1318

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 148 PLDRSSEVPVLYPRPAQWEAGLGLASSASTPTLSRS 41
           PL R   VPV Y  PA ++  + +++S+STP  S S
Sbjct: 37  PLPRRPPVPVSYELPASYQRSVPVSTSSSTPVSSPS 72


>SB_2542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +2

Query: 185 LTTRGWDDGLF--KDVDLMIVKSLVY--FCEYSGAVLLRN 292
           L  RGW DGLF  K V+  +V+ LVY   C+ S    L N
Sbjct: 371 LVNRGWGDGLFLEKGVNQALVRVLVYSSVCDGSEETALFN 410


>SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1879

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 57   GVDAEDARPRPASH*AGRGYRTGTSELRSSGTGSITMLHQ 176
            G + E+A+ +     AGR  RT T+ L  +G  S+T +H+
Sbjct: 1785 GEEDEEAKRKRMYQAAGRWRRTMTNTLPRTGNTSLTNMHE 1824


>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -3

Query: 161  DGSCAAGPKL*GTGPISPTSSVGGWPRSC 75
            DG C     L   GP+    S  GWP  C
Sbjct: 1661 DGKCVCDKDLGYKGPVCAIPSCPGWPVDC 1689


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,480,537
Number of Sequences: 59808
Number of extensions: 330609
Number of successful extensions: 723
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)