Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0533
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.025
SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)                   30   2.2  
SB_23075| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_15712| Best HMM Match : Cadherin (HMM E-Value=0)                    29   5.1  
SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 111 VTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESL 227
           V +AAI G DG+ WA S GF +S+ E  +++   ++ S+
Sbjct: 7   VQRAAIHGLDGSCWATSSGFSVSQQEAMELLKSLKDGSV 45


>SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)
          Length = 571

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 307 GKVGVHCMKTQQAVVIXLYEEPIQPQQAASVVEKLGEYLITCGY 438
           G  G   + T Q ++I  Y E + P   ++V EKL +Y    G+
Sbjct: 528 GNEGAVAVLTSQCLLIGAYSEGMTPGCCSAVTEKLADYFRVNGF 571


>SB_23075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 354

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +3

Query: 75  DYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIA 254
           D++ +Q+  S C+   A+A   G    K   F +  D   ++V   + ++L TS  + I 
Sbjct: 249 DFIMRQIETSNCLRILALAERHGLKILKEAAFSVIMDNFTEVVETDDFKNLSTSQVIDIL 308

Query: 255 AR 260
            R
Sbjct: 309 LR 310


>SB_15712| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1075

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -3

Query: 331 SCNARRPCQVRADDMVCATEVDVPRAAIVTPPLVSSDSFSKPATIFATSSFEISKPSDF 155
           SC+  RP  +    +  AT+ D    AI+T  +VS +     +    T    ISKP D+
Sbjct: 124 SCSENRPIGLTVATLT-ATDADATTNAIITFVIVSGNEGEAFSIDKVTGDITISKPLDY 181


>SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 383

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
 Frame = +3

Query: 63  MSWQDYVDKQLMASRCVT------KAAIAGHDGNV-WAKSE---GFEISKDEVAKIVAGF 212
           MSW  Y+D  L  ++  T      KA I G DG   W  +      ++  +E  KI   F
Sbjct: 112 MSWDSYIDNLLAQAKDATGNCHADKACIIGLDGGAPWTSAGHACAVKLQPEECTKIANCF 171

Query: 213 ENESLLTSGGVTIAARG 263
           +N+   +     I A G
Sbjct: 172 KNKDFTSFMSSGIHAEG 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,870,089
Number of Sequences: 59808
Number of extensions: 481149
Number of successful extensions: 960
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)