Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0878
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42049| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.034
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_57424| Best HMM Match : Endonuclease_1 (HMM E-Value=6.1e-20)        28   9.1  

>SB_42049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 35.9 bits (79), Expect = 0.034
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +1

Query: 130 SRLMTTTGGAQGVGEVPPGGINALLEVGQSLAQQMQAANPDL 255
           +R+    GGA G G    GG+  L +  QS   QMQ  NP+L
Sbjct: 130 NRVGNMMGGAGGGGGASGGGMTNLFQAAQSFGDQMQQTNPEL 171


>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2973

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +2

Query: 329 CISIEPVRGDWDP-QFSYWS 385
           CIS+ P+R DW+  +FS WS
Sbjct: 205 CISVFPLRSDWNRIRFSLWS 224


>SB_57424| Best HMM Match : Endonuclease_1 (HMM E-Value=6.1e-20)
          Length = 360

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 357 TGILNSHTGLYFCLLSQFQLHMIRVKFYFI 446
           TG+ + +TG  F  + +F+  + R+ FYFI
Sbjct: 165 TGLFSGYTGTVFEPIDEFKGDIARIYFYFI 194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,557,924
Number of Sequences: 59808
Number of extensions: 409277
Number of successful extensions: 765
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)