BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0877 (469 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20) 69 1e-12 SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13) 29 1.5 SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13) 29 1.5 SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9 SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 29 2.5 SB_35352| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016) 28 4.4 SB_12579| Best HMM Match : zf-C2H2 (HMM E-Value=5.4e-28) 28 4.4 SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4 SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08) 28 4.4 SB_17733| Best HMM Match : DUF1279 (HMM E-Value=5.1) 27 5.9 SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9 SB_33131| Best HMM Match : DUF1168 (HMM E-Value=1.7e-06) 27 5.9 SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9 SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9 SB_21382| Best HMM Match : Ail_Lom (HMM E-Value=2.5) 27 7.7 SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33) 27 7.7 >SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20) Length = 457 Score = 69.3 bits (162), Expect = 1e-12 Identities = 36/74 (48%), Positives = 47/74 (63%), Gaps = 3/74 (4%) Frame = +1 Query: 256 EVIFDVLIAGGLLLPGGSVSMDGESP---KTNTCIFSGNEDMDTMRNFEQGFVKLMRRYK 426 E +FDVL A PGGS+ DG +P KTN CIF N D +T+R Q KL+ RY+ Sbjct: 50 EFLFDVLFAA----PGGSIVEDGPNPSTYKTNICIFEANNDNETLRKHVQMHNKLICRYR 105 Query: 427 YLEKMFEEEMKKVL 468 YL+K +E+EM K+L Sbjct: 106 YLQKSYEDEMNKIL 119 Score = 50.4 bits (115), Expect = 7e-07 Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 3/49 (6%) Frame = +2 Query: 122 EKEKYDPNGFRDALVQG---LERAGGDLDAAYKYLDSAGSKLDYRRYAK 259 EKEK+ P GFRDA++ G L G DL+ K+LD++G KL+YR Y + Sbjct: 2 EKEKHHPLGFRDAIISGLNDLNDKGYDLEQVAKFLDTSGGKLNYRLYGE 50 >SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13) Length = 609 Score = 29.5 bits (63), Expect = 1.5 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Frame = +3 Query: 99 GSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRP--DQNSTT 245 G + KE +K TV T + P AIS+QPT +P D+N T Sbjct: 40 GGQYSKEQQKAGQDNTVDMTQQHDRMGDPDAISSQPTEDTVKPMADKNRPT 90 >SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13) Length = 366 Score = 29.5 bits (63), Expect = 1.5 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Frame = +3 Query: 99 GSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRP--DQNSTT 245 G + KE +K TV T + P AIS+QPT +P D+N T Sbjct: 40 GGQYSKEQQKAGQDNTVDMTQQHDRMGDPDAISSQPTEDTVKPMADKNRPT 90 >SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 518 Score = 29.1 bits (62), Expect = 1.9 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 5/35 (14%) Frame = +2 Query: 92 GQRIKTRKRDEK-----EKYDPNGFRDALVQGLER 181 G++ K RK DEK +K+DP+G LV+ LER Sbjct: 204 GEKDKGRKSDEKSEDGEKKFDPSGCDKDLVEALER 238 >SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) Length = 2049 Score = 28.7 bits (61), Expect = 2.5 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = +3 Query: 63 VRR*KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVWSGP 185 V R K + RV + + R+R + LWYR WS P Sbjct: 560 VEREKREKERVQKKLEKDKERERQREQKRKEALWYREWSRP 600 >SB_35352| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016) Length = 221 Score = 27.9 bits (59), Expect = 4.4 Identities = 13/61 (21%), Positives = 35/61 (57%) Frame = -3 Query: 407 FTNPCSKFRMVSISSLPEKMQVLVLGDSPSIDTEPPGSSRPPAMSTSNMTSHSVGSRVLI 228 F P + ++ SI+ L +++Q L+ ++PS ++ + PP ++++ ++ + S V + Sbjct: 35 FNQPRTPAKVPSINPL-QQLQALIFKETPSFESRTRQNKPPPLLASNQVSVRAERSDVAM 93 Query: 227 R 225 + Sbjct: 94 K 94 >SB_12579| Best HMM Match : zf-C2H2 (HMM E-Value=5.4e-28) Length = 400 Score = 27.9 bits (59), Expect = 4.4 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 2/83 (2%) Frame = -3 Query: 356 EKMQVLVLGDSPSIDTEPPGSSRPPAMSTSNMTSHSVGSRVLIRPSLGTCRLRRDRHRPA 177 +K L P + +S A T N HS G L+ + +R HR Sbjct: 6 DKRTALAFESMPVQCSSLGNTSGTTAEYTDNRKPHSPGMNHLLDSAPHLSSIRLASHRLP 65 Query: 176 PDPV--PERRGNRSGHTSLSHLF 114 PDP+ ++ SG S H F Sbjct: 66 PDPLTYEQKSSAMSGQQSFYHSF 88 >SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 886 Score = 27.9 bits (59), Expect = 4.4 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -3 Query: 335 LGDSPSIDTEPPGSSRPPAMSTSNMTS 255 L D+P+ + PP S+ P A ST M+S Sbjct: 162 LWDAPTPTSAPPASAPPKAQSTQGMSS 188 >SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08) Length = 409 Score = 27.9 bits (59), Expect = 4.4 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = -3 Query: 218 LGTCRLRRDRHRPAPDPVPERRGNRSGHTSLSHLFFWS*S-VDPIILVF 75 L C + RDR+ P+ R + HT++ +F W S V +I ++ Sbjct: 26 LSLCAITRDRYLAVTSPLQYLRRMPNAHTAVQIVFCWVTSLVSAVITIY 74 >SB_17733| Best HMM Match : DUF1279 (HMM E-Value=5.1) Length = 292 Score = 27.5 bits (58), Expect = 5.9 Identities = 10/30 (33%), Positives = 17/30 (56%) Frame = -3 Query: 323 PSIDTEPPGSSRPPAMSTSNMTSHSVGSRV 234 P + T PP + PP ++ MTS +V ++ Sbjct: 226 PLVQTVPPPQASPPKLNNQEMTSSAVKKKL 255 >SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 393 Score = 27.5 bits (58), Expect = 5.9 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = -3 Query: 392 SKFRMVSISSLPEKMQVLVLGDSPSIDTEPPGSSRPPA 279 S+ R +++++ ++QV PSI ++PP PPA Sbjct: 132 SQDRHIAMTTRKAQVQVSASSSGPSIASQPPQPPAPPA 169 >SB_33131| Best HMM Match : DUF1168 (HMM E-Value=1.7e-06) Length = 114 Score = 27.5 bits (58), Expect = 5.9 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -2 Query: 363 IAGEDAGVGLGRFAVHRHRTARQQQAASNEYIE 265 + G AG G G F H +R R+++ EYIE Sbjct: 67 VMGSSAGAGSGEF--HVYRATRRREYNRQEYIE 97 >SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1185 Score = 27.5 bits (58), Expect = 5.9 Identities = 17/73 (23%), Positives = 32/73 (43%) Frame = -3 Query: 305 PPGSSRPPAMSTSNMTSHSVGSRVLIRPSLGTCRLRRDRHRPAPDPVPERRGNRSGHTSL 126 PP + P M +++ + S+ S + S+ + R+ AP P+P++ G S+ Sbjct: 254 PPEEPQSPVMGSTSTLNSSMTS---LSSSMSSLSALREEDESAP-PIPDKEGRPPSDPSV 309 Query: 125 SHLFFWS*SVDPI 87 L DP+ Sbjct: 310 DRLVLVRPPSDPV 322 >SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1000 Score = 27.5 bits (58), Expect = 5.9 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Frame = -3 Query: 329 DSPSIDT-EPPGSSRPPAMSTSNMTSHSVGSRVLIRPSLGTCRLRRDRHRPAPDPVPERR 153 + PS+ T EPP PP ++ S+S S+ I + G+ D P P P ++ Sbjct: 840 EGPSLITAEPPP---PPPVARKPSRSNSTSSQQSIESAPGSPPTGADDFPPPPPPPVMKK 896 Query: 152 GNRSGHTSLSHL 117 +R G S L Sbjct: 897 PSRGGSLKESRL 908 >SB_21382| Best HMM Match : Ail_Lom (HMM E-Value=2.5) Length = 473 Score = 27.1 bits (57), Expect = 7.7 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 4/37 (10%) Frame = +3 Query: 285 RPAAAGRFGV----DGRRIAQDQHLHLLRQ*GYGHHA 383 R AAAG FG D R ++ LH + GYGHH+ Sbjct: 224 RYAAAGFFGRQAIDDSRPTLEESRLHEGTKYGYGHHS 260 >SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33) Length = 585 Score = 27.1 bits (57), Expect = 7.7 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +2 Query: 317 WTANRPRPTPASSPAMRIWTPCEIS 391 WT+ R P S PA+ IW EIS Sbjct: 371 WTSREER-MPTSEPALNIWGSSEIS 394 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,867,037 Number of Sequences: 59808 Number of extensions: 328442 Number of successful extensions: 1179 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1068 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1175 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 969807871 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -