SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0877
         (469 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)                    69   1e-12
SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)                 29   1.5  
SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)                 29   1.5  
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   29   2.5  
SB_35352| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)                28   4.4  
SB_12579| Best HMM Match : zf-C2H2 (HMM E-Value=5.4e-28)               28   4.4  
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08)                  28   4.4  
SB_17733| Best HMM Match : DUF1279 (HMM E-Value=5.1)                   27   5.9  
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.9  
SB_33131| Best HMM Match : DUF1168 (HMM E-Value=1.7e-06)               27   5.9  
SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.9  
SB_21382| Best HMM Match : Ail_Lom (HMM E-Value=2.5)                   27   7.7  
SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33)                 27   7.7  

>SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)
          Length = 457

 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 36/74 (48%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
 Frame = +1

Query: 256 EVIFDVLIAGGLLLPGGSVSMDGESP---KTNTCIFSGNEDMDTMRNFEQGFVKLMRRYK 426
           E +FDVL A     PGGS+  DG +P   KTN CIF  N D +T+R   Q   KL+ RY+
Sbjct: 50  EFLFDVLFAA----PGGSIVEDGPNPSTYKTNICIFEANNDNETLRKHVQMHNKLICRYR 105

Query: 427 YLEKMFEEEMKKVL 468
           YL+K +E+EM K+L
Sbjct: 106 YLQKSYEDEMNKIL 119



 Score = 50.4 bits (115), Expect = 7e-07
 Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
 Frame = +2

Query: 122 EKEKYDPNGFRDALVQG---LERAGGDLDAAYKYLDSAGSKLDYRRYAK 259
           EKEK+ P GFRDA++ G   L   G DL+   K+LD++G KL+YR Y +
Sbjct: 2   EKEKHHPLGFRDAIISGLNDLNDKGYDLEQVAKFLDTSGGKLNYRLYGE 50


>SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
          Length = 609

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 99  GSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRP--DQNSTT 245
           G +  KE +K     TV  T  +     P AIS+QPT    +P  D+N  T
Sbjct: 40  GGQYSKEQQKAGQDNTVDMTQQHDRMGDPDAISSQPTEDTVKPMADKNRPT 90


>SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
          Length = 366

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 99  GSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRP--DQNSTT 245
           G +  KE +K     TV  T  +     P AIS+QPT    +P  D+N  T
Sbjct: 40  GGQYSKEQQKAGQDNTVDMTQQHDRMGDPDAISSQPTEDTVKPMADKNRPT 90


>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
 Frame = +2

Query: 92  GQRIKTRKRDEK-----EKYDPNGFRDALVQGLER 181
           G++ K RK DEK     +K+DP+G    LV+ LER
Sbjct: 204 GEKDKGRKSDEKSEDGEKKFDPSGCDKDLVEALER 238


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 63  VRR*KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVWSGP 185
           V R K +  RV     + + R+R   +     LWYR WS P
Sbjct: 560 VEREKREKERVQKKLEKDKERERQREQKRKEALWYREWSRP 600


>SB_35352| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)
          Length = 221

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/61 (21%), Positives = 35/61 (57%)
 Frame = -3

Query: 407 FTNPCSKFRMVSISSLPEKMQVLVLGDSPSIDTEPPGSSRPPAMSTSNMTSHSVGSRVLI 228
           F  P +  ++ SI+ L +++Q L+  ++PS ++    +  PP ++++ ++  +  S V +
Sbjct: 35  FNQPRTPAKVPSINPL-QQLQALIFKETPSFESRTRQNKPPPLLASNQVSVRAERSDVAM 93

Query: 227 R 225
           +
Sbjct: 94  K 94


>SB_12579| Best HMM Match : zf-C2H2 (HMM E-Value=5.4e-28)
          Length = 400

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
 Frame = -3

Query: 356 EKMQVLVLGDSPSIDTEPPGSSRPPAMSTSNMTSHSVGSRVLIRPSLGTCRLRRDRHRPA 177
           +K   L     P   +    +S   A  T N   HS G   L+  +     +R   HR  
Sbjct: 6   DKRTALAFESMPVQCSSLGNTSGTTAEYTDNRKPHSPGMNHLLDSAPHLSSIRLASHRLP 65

Query: 176 PDPV--PERRGNRSGHTSLSHLF 114
           PDP+   ++    SG  S  H F
Sbjct: 66  PDPLTYEQKSSAMSGQQSFYHSF 88


>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 335 LGDSPSIDTEPPGSSRPPAMSTSNMTS 255
           L D+P+  + PP S+ P A ST  M+S
Sbjct: 162 LWDAPTPTSAPPASAPPKAQSTQGMSS 188


>SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08)
          Length = 409

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 218 LGTCRLRRDRHRPAPDPVPERRGNRSGHTSLSHLFFWS*S-VDPIILVF 75
           L  C + RDR+     P+   R   + HT++  +F W  S V  +I ++
Sbjct: 26  LSLCAITRDRYLAVTSPLQYLRRMPNAHTAVQIVFCWVTSLVSAVITIY 74


>SB_17733| Best HMM Match : DUF1279 (HMM E-Value=5.1)
          Length = 292

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 323 PSIDTEPPGSSRPPAMSTSNMTSHSVGSRV 234
           P + T PP  + PP ++   MTS +V  ++
Sbjct: 226 PLVQTVPPPQASPPKLNNQEMTSSAVKKKL 255


>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 392 SKFRMVSISSLPEKMQVLVLGDSPSIDTEPPGSSRPPA 279
           S+ R +++++   ++QV      PSI ++PP    PPA
Sbjct: 132 SQDRHIAMTTRKAQVQVSASSSGPSIASQPPQPPAPPA 169


>SB_33131| Best HMM Match : DUF1168 (HMM E-Value=1.7e-06)
          Length = 114

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 363 IAGEDAGVGLGRFAVHRHRTARQQQAASNEYIE 265
           + G  AG G G F  H +R  R+++    EYIE
Sbjct: 67  VMGSSAGAGSGEF--HVYRATRRREYNRQEYIE 97


>SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1185

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/73 (23%), Positives = 32/73 (43%)
 Frame = -3

Query: 305 PPGSSRPPAMSTSNMTSHSVGSRVLIRPSLGTCRLRRDRHRPAPDPVPERRGNRSGHTSL 126
           PP   + P M +++  + S+ S   +  S+ +    R+    AP P+P++ G      S+
Sbjct: 254 PPEEPQSPVMGSTSTLNSSMTS---LSSSMSSLSALREEDESAP-PIPDKEGRPPSDPSV 309

Query: 125 SHLFFWS*SVDPI 87
             L       DP+
Sbjct: 310 DRLVLVRPPSDPV 322


>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -3

Query: 329  DSPSIDT-EPPGSSRPPAMSTSNMTSHSVGSRVLIRPSLGTCRLRRDRHRPAPDPVPERR 153
            + PS+ T EPP    PP ++     S+S  S+  I  + G+     D   P P P   ++
Sbjct: 840  EGPSLITAEPPP---PPPVARKPSRSNSTSSQQSIESAPGSPPTGADDFPPPPPPPVMKK 896

Query: 152  GNRSGHTSLSHL 117
             +R G    S L
Sbjct: 897  PSRGGSLKESRL 908


>SB_21382| Best HMM Match : Ail_Lom (HMM E-Value=2.5)
          Length = 473

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +3

Query: 285 RPAAAGRFGV----DGRRIAQDQHLHLLRQ*GYGHHA 383
           R AAAG FG     D R   ++  LH   + GYGHH+
Sbjct: 224 RYAAAGFFGRQAIDDSRPTLEESRLHEGTKYGYGHHS 260


>SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33)
          Length = 585

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 317 WTANRPRPTPASSPAMRIWTPCEIS 391
           WT+   R  P S PA+ IW   EIS
Sbjct: 371 WTSREER-MPTSEPALNIWGSSEIS 394


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,867,037
Number of Sequences: 59808
Number of extensions: 328442
Number of successful extensions: 1179
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -