Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0875
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)                   72   6e-13
SB_46399| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.026
SB_433| Best HMM Match : DUF883 (HMM E-Value=0.75)                     32   0.42 
SB_23676| Best HMM Match : DUF904 (HMM E-Value=0.44)                   32   0.55 
SB_44831| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_40295| Best HMM Match : HALZ (HMM E-Value=0.25)                     29   3.9  
SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_17372| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_10768| Best HMM Match : Collagen (HMM E-Value=1.5)                  28   9.0  

>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
          Length = 440

 Score = 71.7 bits (168), Expect = 6e-13
 Identities = 34/37 (91%), Positives = 35/37 (94%)
 Frame = +3

Query: 621 QNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIM 731
           +NIVSTVNL CKLDLKKIAL ARNAEYNPKRFAAVIM
Sbjct: 284 RNIVSTVNLGCKLDLKKIALQARNAEYNPKRFAAVIM 320


>SB_46399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 36.3 bits (80), Expect = 0.026
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 498 YDVSMIAAGNLSSQQMLSQASPAPMTPLTP 587
           YD + +  GN SS +  S A  +PMTPLTP
Sbjct: 303 YDTTTVTNGNASSNETTSSAPASPMTPLTP 332


>SB_433| Best HMM Match : DUF883 (HMM E-Value=0.75)
          Length = 386

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 21/83 (25%), Positives = 34/83 (40%)
 Frame = +3

Query: 438 CTNSQLCNSATDDAASNSTKYDVSMIAAGNLSSQQMLSQASPAPMTPLTPLSADPGILPQ 617
           CT    CNS + +   +  ++ +  I AG  + + +  Q          P+S +   L  
Sbjct: 211 CTFYNRCNSLSSEGTVSDGEHIILRIPAGQYTIETLKRQIDEGLRLGEKPISIEDSSLEA 270

Query: 618 LQNIVSTVNLDCKLDLKKIALHA 686
            +N+V    L C L LK   L A
Sbjct: 271 HRNVVLNEPLACLLGLKTKELEA 293


>SB_23676| Best HMM Match : DUF904 (HMM E-Value=0.44)
          Length = 591

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 21/83 (25%), Positives = 34/83 (40%)
 Frame = +3

Query: 438 CTNSQLCNSATDDAASNSTKYDVSMIAAGNLSSQQMLSQASPAPMTPLTPLSADPGILPQ 617
           CT    CNS + +   +  ++ +  I AG  + + +  Q          P+S +   L  
Sbjct: 416 CTFYNRCNSLSSEGTVSDGEHIILRIPAGQYTIETLKRQIDGGLRLGEKPISIEDSSLEA 475

Query: 618 LQNIVSTVNLDCKLDLKKIALHA 686
            +N+V    L C L LK   L A
Sbjct: 476 HRNVVLNEPLACLLGLKTKELEA 498


>SB_44831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/83 (25%), Positives = 33/83 (39%)
 Frame = +3

Query: 438 CTNSQLCNSATDDAASNSTKYDVSMIAAGNLSSQQMLSQASPAPMTPLTPLSADPGILPQ 617
           CT    CNS + +   +  +  +  I AG  + + +  Q          P+S +   L  
Sbjct: 462 CTFYNRCNSLSSEGTVSDGENIILRIPAGQYTVETLKRQIDGGLRLGEKPISIEDSSLEA 521

Query: 618 LQNIVSTVNLDCKLDLKKIALHA 686
            +N+V    L C L LK   L A
Sbjct: 522 HRNVVLNEPLACLLGLKTKELEA 544


>SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 692

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +3

Query: 492 TKYDVSMIAAGNLSSQQML-----SQASPAPMTPLTPLSADPGILPQLQNIVSTVNLDCK 656
           T   ++  A G  + +QM+      +A P P TP   L     +LP +QN V      CK
Sbjct: 198 TATSIATSAIGQTNKEQMILIGRGKRAPPHPFTPRHQLITPQVLLPPIQNAVLVFIFSCK 257

Query: 657 L 659
           +
Sbjct: 258 V 258


>SB_40295| Best HMM Match : HALZ (HMM E-Value=0.25)
          Length = 477

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 579 LTPLSADPG--ILPQLQNIVSTVNLDCKLDLK 668
           LTPL    G  ILP+LQN  +T+ +D K  LK
Sbjct: 58  LTPLDVGRGVNILPRLQNQTATIKVDLKRMLK 89


>SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 365 PLWVRRQL*DLAQSWGLHR 421
           PLWV  +  DLA+ WGL R
Sbjct: 689 PLWVNERNVDLAEDWGLGR 707


>SB_17372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 387 CRIWRNHGDSTEVYAHICTN-SQLCNSATDDAASNSTKYDVSMIAAGNLSSQQMLSQASP 563
           C +W  +G+  +    +  N  + CN+ T+  +  +    VS  A+ + S    LS  +P
Sbjct: 86  CLVWAKNGECQKNKDWMSANCKKSCNTCTNGGSETTMSPPVSPSASVSTSRPSTLSPVTP 145

Query: 564 AP 569
            P
Sbjct: 146 PP 147


>SB_10768| Best HMM Match : Collagen (HMM E-Value=1.5)
          Length = 274

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 504 VSMIAAGNLSSQQMLSQASPAPMTPL--TPLSADP 602
           ++ IAA + SS   L  A+P P TP    P SADP
Sbjct: 22  LATIAAASPSSSADLEVAAPTPATPAPNIPASADP 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,994,359
Number of Sequences: 59808
Number of extensions: 381405
Number of successful extensions: 1207
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)