Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0875
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13445.1 68416.m01691 transcription initiation factor IID-1 (...    83   2e-16
At1g55520.2 68414.m06352 transcription initiation factor IID-2 (...    82   3e-16
At1g55520.1 68414.m06351 transcription initiation factor IID-2 (...    82   3e-16
At5g08520.1 68418.m01011 myb family transcription factor contain...    31   0.79 
At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam ...    29   2.4  
At2g40720.1 68415.m05023 pentatricopeptide (PPR) repeat-containi...    29   3.2  
At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catal...    29   4.2  
At1g51350.1 68414.m05775 armadillo/beta-catenin repeat family pr...    28   5.6  
At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:...    28   7.3  
At2g17920.1 68415.m02075 expressed protein similar to zinc finge...    27   9.7  

>At3g13445.1 68416.m01691 transcription initiation factor IID-1
           (TFIID-1) / TATA-box factor 1 / TATA sequence-binding
           protein 1 (TBP1) identical to Swiss-Prot:P28147
           transcription initiation factor TFIID-1 (TATA-box factor
           1)(TATA sequence-binding protein 1) (TBP-1) [Arabidopsis
           thaliana]
          Length = 200

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 42/49 (85%), Positives = 43/49 (87%), Gaps = 1/49 (2%)
 Frame = +3

Query: 588 LSADP-GILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIM 731
           LS  P GI+P LQNIVSTVNLDCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 14  LSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIM 62


>At1g55520.2 68414.m06352 transcription initiation factor IID-2
           (TFIID-2) / TATA-box factor 2 / TATA sequence-binding
           protein 2 (TBP2) identical to
           Swiss-Prot:P28148|TF22_ARATH Transcription initiation
           factor TFIID-2 (TATA-box factor 2) (TATA
           sequence-binding protein 2) (TBP-2) [Arabidopsis
           thaliana]
          Length = 200

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 39/43 (90%), Positives = 40/43 (93%)
 Frame = +3

Query: 603 GILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIM 731
           GI+P LQNIVSTVNLDCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 20  GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIM 62


>At1g55520.1 68414.m06351 transcription initiation factor IID-2
           (TFIID-2) / TATA-box factor 2 / TATA sequence-binding
           protein 2 (TBP2) identical to
           Swiss-Prot:P28148|TF22_ARATH Transcription initiation
           factor TFIID-2 (TATA-box factor 2) (TATA
           sequence-binding protein 2) (TBP-2) [Arabidopsis
           thaliana]
          Length = 200

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 39/43 (90%), Positives = 40/43 (93%)
 Frame = +3

Query: 603 GILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIM 731
           GI+P LQNIVSTVNLDCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 20  GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIM 62


>At5g08520.1 68418.m01011 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 298

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 459 NSATDDAASNSTKYDVSMIAAGNLSSQQMLSQASPAPMTPLTPLSADPGI 608
           N++ ++  +N+     ++   GN S++Q +SQA P P    TP    P +
Sbjct: 201 NNSNNNNNNNNNNSSPAVAGGGNKSAKQAVSQAPPGPPMYGTPAIGQPAV 250


>At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 1006

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +3

Query: 483 SNSTKYDVSMIAAGNLSSQQMLSQASPAPMTPLTPLSADPGILPQ-LQNIVSTVNLDCKL 659
           S  TK D    AA    +   +S + P P    T +S DPG  P+ L+  V      CK 
Sbjct: 422 SGFTKMDKDSTAASAAQAPAYVSVSMPKPKDHTTAMS-DPGTFPKSLRGFVERAFARCKD 480

Query: 660 DLKK 671
           D +K
Sbjct: 481 DKEK 484


>At2g40720.1 68415.m05023 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 860

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -2

Query: 730 IITAAKRLGLYSALRACNAIFFKSNLQSRFTVE----TMFCNCGKIP 602
           +I+    LGLY+  ++ +A  FK  +QS  T+E    T++  CG  P
Sbjct: 379 VISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDP 425


>At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catalytic
            subunit, putative similar to SP|O48653 DNA polymerase
            alpha catalytic subunit (EC 2.7.7.7) {Oryza sativa};
            contains Pfam profiles: PF03175 DNA polymerase type B,
            organellar and viral, PF00136 DNA polymerase family B,
            PF03104 DNA polymerase family B, exonuclease domain
          Length = 1492

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 576  PLTPLSADPGILPQLQNIVSTVNLDCKLDLKK 671
            P  P S  PGILP+L   + ++    KL +KK
Sbjct: 945  PRLPSSQTPGILPKLMEHLVSIRKSVKLKMKK 976


>At1g51350.1 68414.m05775 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 666

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 543 MLSQASPAPMTPLTPLSADPGILPQLQNIVSTVNLDCKLDLKKI 674
           ++S +SP        L  + GI+PQL+N+V+   LD K+ ++ +
Sbjct: 613 LISPSSPGAFDRHVKLR-NAGIIPQLKNMVNDACLDVKIRIRTV 655


>At5g20490.1 68418.m02435 myosin, putative similar to myosin
           (GI:433663) [Arabidopsis thaliana]; myosin-like protein
           my5, common sunflower, PIR:T14279
          Length = 1545

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 679 NAIFFKSNLQSRFT--VETMFCNCGKIPGSA 593
           NA   ++N  SRF   VE  F NCG+I G+A
Sbjct: 217 NAKTLRNNNSSRFGKFVELQFDNCGRISGAA 247


>At2g17920.1 68415.m02075 expressed protein similar to zinc finger
           protein [Arabidopsis thaliana] GI:976277
          Length = 307

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 507 SMIAAGNLSSQQMLSQASPAPMTPLTPLSADP 602
           S++ + N S  QM   + PAP+TP   + A P
Sbjct: 237 SVLRSSNNSQSQMTESSFPAPLTPPPRVPAPP 268


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,940,626
Number of Sequences: 28952
Number of extensions: 261202
Number of successful extensions: 677
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)