Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0874
(758 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27799| Best HMM Match : ChaC (HMM E-Value=0) 76 3e-14
SB_24978| Best HMM Match : ChaC (HMM E-Value=0) 63 3e-10
SB_2193| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.00071) 31 1.0
SB_35| Best HMM Match : zf-U1 (HMM E-Value=0.12) 29 5.4
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 28 7.2
SB_24189| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_53758| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_28433| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_27799| Best HMM Match : ChaC (HMM E-Value=0)
Length = 216
Score = 76.2 bits (179), Expect = 3e-14
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Frame = +3
Query: 222 KKRNEQFRIKNE--SNKEPFWVFGYGSLCWNPGFEYQQSLTGYVKGFSRRFWQGNTTHRG 395
KKRN +E S+ + WVFGYGSL W P F Y++S+ G+++GF R+FWQG+ HRG
Sbjct: 4 KKRNTIANDDDEEYSSSDSIWVFGYGSLIWKPDFTYERSVVGHIRGFERKFWQGSVWHRG 63
Query: 396 TED 404
E+
Sbjct: 64 NEE 66
Score = 66.1 bits (154), Expect = 3e-11
Identities = 35/84 (41%), Positives = 48/84 (57%)
Frame = +1
Query: 505 HQRECKLGGYKTCVVNFHPTPFLPATRADKKDALLYIALPENKHWLGSAPLPDIAKQILE 684
++RE LGGY+ + F+P + +ALLY A PEN + G +A QI+
Sbjct: 90 NKREIALGGYELHNLTFYPQD----QSLEPFNALLYAATPENSLYFGKETPEKLALQIVS 145
Query: 685 CRGPSGSNVEYLLRLADFMREEIP 756
G SG NVEYL R+ADFMR ++P
Sbjct: 146 AHGVSGPNVEYLFRIADFMRSKVP 169
>SB_24978| Best HMM Match : ChaC (HMM E-Value=0)
Length = 189
Score = 62.9 bits (146), Expect = 3e-10
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +3
Query: 267 EPFWVFGYGSLCWNPGFEYQQSLTGYVKGFSRRFWQGNTTHRGTEDK 407
+ W+FGYGSL W F Y++ + GY+KG+ R+F+QG+ HRG K
Sbjct: 12 QDLWIFGYGSLVWKVNFPYKKKVAGYIKGYVRKFYQGSCDHRGVPGK 58
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/68 (45%), Positives = 40/68 (58%)
Frame = +1
Query: 529 GYKTCVVNFHPTPFLPATRADKKDALLYIALPENKHWLGSAPLPDIAKQILECRGPSGSN 708
GY FHP+ L ++ +LY+A EN+ +LG APLP+IA QI +G SG N
Sbjct: 87 GYTAGFTTFHPSGNLE----EQFQVMLYVATQENEFYLGPAPLPEIAYQIAHSKGTSGKN 142
Query: 709 VEYLLRLA 732
EYLL LA
Sbjct: 143 SEYLLNLA 150
>SB_2193| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.00071)
Length = 482
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +2
Query: 242 PNQKRI*QGTFLGIWLWFPLLESRVRIPAILDWLCKRFLKEILAREHHSSW 394
PN+K+ ++ WL ++ + I WLC+ +LK+ L R++ W
Sbjct: 295 PNEKKWLCRDYIKQWLCRDYIKQWLCRDYIKQWLCRDYLKQWLCRDYIKQW 345
>SB_35| Best HMM Match : zf-U1 (HMM E-Value=0.12)
Length = 366
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +1
Query: 79 KKFFSMYAR*NHLTRLFI---ILLSHFLFEFKCY 171
KK +S YA NHL RL+I + ++ E+ CY
Sbjct: 271 KKAYSQYASHNHLLRLYITEHVCYVGYISEYVCY 304
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 163 KCYYFNYKSCLCLYTKMDKLRNETSSSESKTNL 261
K YY +K L++K+D+L ++ +S E K N+
Sbjct: 523 KIYYDFHKQRQMLWSKLDELESQLTSDEPKENV 555
>SB_24189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1220
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -2
Query: 580 WPVKKVLDGSSQRRSCSHLICILFGEIRQCTLFSAATKNALPQVIP 443
WP K+ G + SH+ C G++R + SA N + +P
Sbjct: 771 WPNKEATVGDLLEEAKSHVDCTSTGKLRLLEIISAKVFNTINNDVP 816
>SB_53758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 413 TRLIFCSTMSGVPLPESP*ETFYI-TSQGLLVFEPWI 306
T + C + G PLPESP F + T + +++ E W+
Sbjct: 121 TTRLDCQVLFGYPLPESPSLGFGVFTLRVVIILEVWV 157
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 413 TRLIFCSTMSGVPLPESP*ETFYI-TSQGLLVFEPWI 306
T + C + G PLPESP F + T + +++ E W+
Sbjct: 194 TTSLDCQVLFGYPLPESPSLGFGVFTLRVVIILEVWV 230
>SB_28433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 536
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 466 NALPQVIPSLSSIRVATRPGLSSVPR*VVFPCQNLL 359
++LP+V+ SL + + GLSS+P +FP + L
Sbjct: 180 SSLPEVLSSLPEVLSSLPEGLSSLPEGSLFPTRGSL 215
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,554,126
Number of Sequences: 59808
Number of extensions: 544254
Number of successful extensions: 1406
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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