Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0871
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.44 
SB_35514| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 935

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 74  NHTTSCGRKTWSFSMPCRHM 15
           +H T+C   TWS +MPC HM
Sbjct: 133 HHLTTCRVSTWSHNMPCLHM 152



 Score = 30.7 bits (66), Expect = 1.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 65  TSCGRKTWSFSMPCRHM 15
           T+C   TWS++MPC HM
Sbjct: 338 TTCRVSTWSYNMPCLHM 354



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -1

Query: 170 SVCYILPL*SWRTPSLLD*HLITTGLRDRRKTNHTTSCGRKTWSFSMPCRHM 15
           + C +  L S+ TP L   H+I   L+     +  T+C   TWS++MPC H+
Sbjct: 220 TTCRVSTL-SYNTPCL---HII---LQHAVSPHGLTTCRVSTWSYNMPCLHI 264



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 65  TSCGRKTWSFSMPCRHM 15
           T+C   TWS++MPC H+
Sbjct: 108 TTCRVSTWSYNMPCLHI 124



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 65  TSCGRKTWSFSMPCRHM 15
           T+C   TWS++MPC H+
Sbjct: 192 TTCRVSTWSYNMPCLHI 208


>SB_35514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 87  VPQPSSNEMLVQERGRPPGLEGEYVANRPVRHSRG 191
           V  P     +   R   PG +G Y A  P R+SRG
Sbjct: 16  VDPPGCRNSMENARTSSPGFQGAYSAPDPFRNSRG 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,719,468
Number of Sequences: 59808
Number of extensions: 467977
Number of successful extensions: 904
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)