Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0870
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                       33   0.16 
SB_41392| Best HMM Match : Nanovirus_C8 (HMM E-Value=6.7)              33   0.22 
SB_23919| Best HMM Match : Nanovirus_C8 (HMM E-Value=7.2)              33   0.22 
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.38 
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)                    29   2.7  
SB_59689| Best HMM Match : Pkinase (HMM E-Value=0.007)                 28   8.1  
SB_55227| Best HMM Match : Ank (HMM E-Value=1.9e-30)                   28   8.1  

>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
 Frame = +3

Query: 327 RDREVYNVLAPEQEEKRNAQRSRCNGRQINSWLQEVD---DKWEKIKEGMLRRQHTEAQT 497
           RD+EV +    E+EEK++ +    +G +    ++++D   DK +K K+  ++ ++TE + 
Sbjct: 162 RDKEVSDD-EEEEEEKKDEEEEEEDGDKDKPKIEDMDEDEDKKDKKKKKTIKEKYTEMEE 220

Query: 498 LHAVKP-WV 521
           L+  KP W+
Sbjct: 221 LNKTKPIWM 229


>SB_41392| Best HMM Match : Nanovirus_C8 (HMM E-Value=6.7)
          Length = 295

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 40  PKPPKD-FNKYLMNRCTYTLQRNVNPEPQIEIPHNLPP 150
           P  PK+  N++L  + T   Q+NV P+PQ  IP  L P
Sbjct: 1   PSSPKNTMNRFLRTQSTPGFQQNVYPQPQTLIPQALAP 38


>SB_23919| Best HMM Match : Nanovirus_C8 (HMM E-Value=7.2)
          Length = 308

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 40  PKPPKD-FNKYLMNRCTYTLQRNVNPEPQIEIPHNLPP 150
           P  PK+  N++L  + T   Q+NV P+PQ  IP  L P
Sbjct: 18  PSSPKNTMNRFLRTQSTPGFQQNVYPQPQTLIPQALAP 55


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = +3

Query: 342  YN-VLAPEQEEKRNAQRSRCNGRQINSWLQEVDDKWEKIKEGMLRRQ--HTEAQTL 500
            YN  LA   + K N +    N RQ N+ L+E+D+   ++KE + ++Q   TE +T+
Sbjct: 2216 YNDALAQLMDRKYNLENDVTNARQFNATLEELDNWIPEVKERVAKQQPISTEPETV 2271


>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4482

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +3

Query: 297  SLPFSVCTILRDREVYNVLAPEQEEKRNAQRSRCNGRQINSW-LQEVDDKWEKIKEGMLR 473
            SL  +VC +L D + +     ++  K+ A+       + N++  ++ + K  K+ E  +R
Sbjct: 2157 SLSETVCVVLEDSQGFADEFCKELRKQGAEIHTVEVPESNNFNTKDEEQKVRKVVEEAIR 2216

Query: 474  RQHTEAQTLHAVKPW 518
            R +  +++LH +  W
Sbjct: 2217 RSNEASKSLHVINFW 2231


>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
          Length = 1244

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 384 QRSRCNGRQINSWLQEVDDKWEKIKEGMLRRQHTEA 491
           ++ R N   I +WL+ VD + E + +G LR   TEA
Sbjct: 518 KKLRENPHDIAAWLELVDHQQEVVSKGQLRAGFTEA 553


>SB_59689| Best HMM Match : Pkinase (HMM E-Value=0.007)
          Length = 881

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/51 (27%), Positives = 30/51 (58%)
 Frame = +1

Query: 103 NVNPEPQIEIPHNLPPQMINEFMTQEKERHRLRIQHLVEKDKLVLAVEQEI 255
           +++P+P ++     PPQ I     ++KER+R + +  +E+ +  L  E+E+
Sbjct: 616 HMHPKPNLK--EEKPPQKITSEEQKQKERNRQKHREEMERKREKLQKEREL 664


>SB_55227| Best HMM Match : Ank (HMM E-Value=1.9e-30)
          Length = 662

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = +3

Query: 255 LRVHGRAERAVANQSLPFSVCTILR------DREVYNVLAPEQEEKRNAQRSR 395
           +R+ G   R++  + +PF VCTIL+       REV +  A       +A+R R
Sbjct: 592 VRLFGNFARSLIRRDVPFGVCTILKHQMTMQHREVLHPAASNSMRYPSAERIR 644


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,372,423
Number of Sequences: 59808
Number of extensions: 484752
Number of successful extensions: 1862
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1861
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)