Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0869
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    28   1.5  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    26   4.5  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   6.0  

>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 326 NNDYTYFKAQNNYTRNVIFFKTIFSAKAYNEI 231
           +NDYT   AQ    +   F +TI   KAY EI
Sbjct: 40  HNDYTQNNAQFQNAQTTTFGRTISRVKAYYEI 71


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 257 FSAKAYNEIKIYDVTTFLCMFEFQN 183
           + AK Y+ +K Y  TTF   F+F N
Sbjct: 124 YKAKTYSLVKEYKGTTFFDGFDFMN 148


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 350 LCVLFSKLFFFKYSILT 400
           LC L SKL+FF+ S+LT
Sbjct: 570 LCSLNSKLWFFRKSVLT 586


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,807,424
Number of Sequences: 5004
Number of extensions: 56132
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)