Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0869
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0331 - 14503063-14503697,14503744-14504019,14504353-14504635 31 1.2
05_03_0311 - 12164955-12165199,12165211-12165217 30 1.5
08_02_0360 + 16196712-16197560,16198126-16198875 30 2.0
03_05_0807 + 27849637-27849823,27850002-27850294,27850736-278509... 30 2.0
11_04_0046 + 12751830-12752285,12752385-12752670,12753329-12753786 29 3.5
06_01_0809 - 6100025-6100251,6100456-6100565,6100919-6100986,610... 29 4.7
04_03_0135 + 11686724-11687209 29 4.7
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155... 28 6.2
03_05_0310 + 23008915-23009841,23010401-23011162 28 6.2
02_03_0111 + 15357384-15357395,15357762-15358055 28 6.2
08_02_0079 + 12005624-12005921,12006144-12006550,12007250-12007840 28 8.2
02_03_0006 - 13868590-13869593,13869887-13870156,13870487-13871090 28 8.2
>06_02_0331 - 14503063-14503697,14503744-14504019,14504353-14504635
Length = 397
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 194 EFQNNNTMITKISLGAINNNFEILDKQYCIYFANTFKIITKNNKY 60
EF++ N + + L + NNF+ L + C F + K NKY
Sbjct: 351 EFRDRNAELG-VELAELRNNFDTLSRSLCAKIKRAFVEMGKENKY 394
>05_03_0311 - 12164955-12165199,12165211-12165217
Length = 83
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 194 EFQNNNTMITKISLGAINNNFEILDKQYCIYFANTFKIITKNNKY 60
E ++ NT + + L I NNF+ L + C F + K NKY
Sbjct: 37 ELRDRNTELG-VELAEIRNNFDTLSRGLCAKIKRAFVEMGKENKY 80
>08_02_0360 + 16196712-16197560,16198126-16198875
Length = 532
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 194 EFQNNNTMITKISLGAINNNFEILDKQYCIYFANTFKIITKNNKY 60
E +++N+ + + L I NNF+ L + C F I K NKY
Sbjct: 486 ELRDHNSELG-VELAEIRNNFDTLSRGLCAKIKRAFIEIGKENKY 529
>03_05_0807 +
27849637-27849823,27850002-27850294,27850736-27850973,
27851075-27851410,27851496-27851581,27851678-27851785,
27851878-27852185,27852265-27852528,27852610-27853381
Length = 863
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 352 QLLPEKYRKIMTIHTLKLRTITQGMLYFSRLYFPPRHIM 236
+LL YR MTI+ L +T+ G F + FP +H +
Sbjct: 545 KLLQPHYRDTMTINALARQTLINGGGIFEQTVFPGKHAL 583
>11_04_0046 + 12751830-12752285,12752385-12752670,12753329-12753786
Length = 399
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 194 EFQNNNTMITKISLGAINNNFEILDKQYCIYFANTFKIITKNNKY 60
E ++ NT + + L I NNF+ L + C F + K NKY
Sbjct: 353 ELRDRNTELG-VELAEIRNNFDNLSRGLCAKIKRAFIEMGKENKY 396
>06_01_0809 -
6100025-6100251,6100456-6100565,6100919-6100986,
6101108-6101229,6101446-6101527,6101629-6101695,
6102811-6102883,6103032-6103148,6104167-6104259,
6104430-6104495,6105121-6105218,6105917-6106016,
6106486-6106660,6106828-6106894,6107574-6107712,
6107830-6107926,6107992-6108130,6108212-6108363
Length = 663
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/84 (22%), Positives = 36/84 (42%)
Frame = -2
Query: 311 YFKAQNNYTRNVIFFKTIFSAKAYNEIKIYDVTTFLCMFEFQNNNTMITKISLGAINNNF 132
Y + + + TRN + +F N++ D + E + I + A+++NF
Sbjct: 577 YQRQRQSGTRNAAHARLMFR----NDVTKLDAIAAILCIESSMTTSAIVDTAGNALHSNF 632
Query: 131 EILDKQYCIYFANTFKIITKNNKY 60
Q CI ++ ++KN KY
Sbjct: 633 TENPDQECILKCDSIAYLSKNIKY 656
>04_03_0135 + 11686724-11687209
Length = 161
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 161 ISLGAINNNFEILDKQYCIYFANTFKIITKNNKY 60
+ L I NNF+ L + C F I K NKY
Sbjct: 125 VELADIRNNFDTLSRGLCAKIKRAFIEIGKENKY 158
>03_05_1068 +
30114682-30114868,30114947-30115239,30115354-30115591,
30115977-30117871
Length = 870
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 349 LLPEKYRKIMTIHTLKLRTITQGMLYFSRLYFPPRHIM 236
LLP YR MTI+ L +T+ G F FP +H +
Sbjct: 554 LLPH-YRDTMTINALARQTLINGGGIFEMTVFPRKHAL 590
>03_05_0310 + 23008915-23009841,23010401-23011162
Length = 562
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 161 ISLGAINNNFEILDKQYCIYFANTFKIITKNNKY 60
+ L I NNF+ + C F ++ K NKY
Sbjct: 526 VELAKIRNNFDTRSRGLCAKIKRAFIVMEKENKY 559
>02_03_0111 + 15357384-15357395,15357762-15358055
Length = 101
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 161 ISLGAINNNFEILDKQYCIYFANTFKIITKNNKY 60
+ L + NNF+ L ++ C F + K NKY
Sbjct: 65 VELAELRNNFDTLSRRLCAKIKRAFIEMGKENKY 98
>08_02_0079 + 12005624-12005921,12006144-12006550,12007250-12007840
Length = 431
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 161 ISLGAINNNFEILDKQYCIYFANTFKIITKNNKY 60
+ L I NNF+ L + C F + K NKY
Sbjct: 395 VELAEIRNNFDTLSRGLCAKIKRAFIEMGKENKY 428
>02_03_0006 - 13868590-13869593,13869887-13870156,13870487-13871090
Length = 625
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 161 ISLGAINNNFEILDKQYCIYFANTFKIITKNNKY 60
+ L I NNF+ L + C F + K NKY
Sbjct: 589 VELAEIRNNFDTLSRGLCAKIKRAFIEMGKENKY 622
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,405,632
Number of Sequences: 37544
Number of extensions: 269548
Number of successful extensions: 378
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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