Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0869
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81557-1|CAB04535.1|  343|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z49911-1|CAA90131.2|  647|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AC199170-5|ABO33263.1|   95|Caenorhabditis elegans Hypothetical ...    28   5.6  

>Z81557-1|CAB04535.1|  343|Caenorhabditis elegans Hypothetical
           protein F59A1.3 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/83 (22%), Positives = 39/83 (46%)
 Frame = +1

Query: 19  HVGIQCVIYIIVRLYLLFLVIILKVLAKYMQYCLSKISKLLFMAPREIFVIIVLLF*NSN 198
           ++ + C  Y ++ L L+F       L +Y+  C   +SK LF  P    +I++ +F    
Sbjct: 90  YIALNCTCYSMIMLLLVF-----HFLYRYLAVCKPNMSK-LFSFPYVTILILIFVF---- 139

Query: 199 MQRNVVTSYIFISLYALAENIVL 267
               V   ++ + +Y  +EN ++
Sbjct: 140 ----VSAEWLVLGVYMASENEII 158


>Z49911-1|CAA90131.2|  647|Caenorhabditis elegans Hypothetical
           protein M28.1 protein.
          Length = 647

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -2

Query: 317 YTYFKAQNNYTRNVIFFKTIFSAKAYNEIKIYDVTTFLCMF 195
           Y+YF+      R +++FK + S   +     ++VT F C++
Sbjct: 570 YSYFEI-----RKILYFKILSSPPVFQNAVTFEVTVFFCLY 605


>AC199170-5|ABO33263.1|   95|Caenorhabditis elegans Hypothetical
           protein T08D2.4 protein.
          Length = 95

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 276 NIPCVIVLSFKVCIVIILRYFSGNNCAYYLASCF-SLNTLY 395
           +IP V++     CI+ I ++   +N  ++   CF SL  LY
Sbjct: 38  HIPKVLICGHSFCIICIEKHLRSSNLTFWRWGCFQSLYMLY 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,305,087
Number of Sequences: 27780
Number of extensions: 309784
Number of successful extensions: 704
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)