Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0868
(657 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 131 3e-31
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 131 3e-31
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 131 3e-31
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 130 6e-31
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 130 6e-31
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 130 8e-31
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 130 8e-31
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 130 8e-31
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 126 1e-29
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 69 3e-12
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 69 3e-12
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 69 3e-12
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 69 3e-12
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 68 6e-12
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 68 6e-12
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 68 6e-12
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 48 5e-06
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 48 5e-06
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 30 1.2
At3g07470.1 68416.m00891 expressed protein contains Pfam profile... 29 2.7
At2g45490.1 68415.m05658 protein kinase, putative contains prote... 28 4.8
At5g20860.1 68418.m02477 pectinesterase family protein contains ... 27 8.3
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 131 bits (317), Expect = 3e-31
Identities = 61/87 (70%), Positives = 64/87 (73%)
Frame = +1
Query: 262 DNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXX 441
DNFVFGQSGAGNNWAKGHYTEGAEL+DAVLDVVRKE ENCDCLQGFQ
Sbjct: 88 DNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGM 147
Query: 442 XXXXXXKIREEYPDRIMNTYSVAPRPK 522
KIREEYPDR+M T+SV P PK
Sbjct: 148 GTLLISKIREEYPDRMMLTFSVFPSPK 174
Score = 108 bits (260), Expect = 3e-24
Identities = 49/71 (69%), Positives = 59/71 (83%)
Frame = +2
Query: 41 FWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTM 220
FWE++ +EHGIDPTG Y G SDLQLER++VYYNEAS G+YVPRAIL+DLEPGTM
Sbjct: 20 FWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASC------GRYVPRAILMDLEPGTM 73
Query: 221 DAVRSGAYGQL 253
D+VR+G YGQ+
Sbjct: 74 DSVRTGPYGQI 84
Score = 87.0 bits (206), Expect = 1e-17
Identities = 38/47 (80%), Positives = 42/47 (89%)
Frame = +3
Query: 510 PSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKV 650
PSPKVSDTVVEPYNA LS+HQLVEN DE +DNEALYDIC+RTLK+
Sbjct: 171 PSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL 217
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 131 bits (317), Expect = 3e-31
Identities = 61/87 (70%), Positives = 64/87 (73%)
Frame = +1
Query: 262 DNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXX 441
DNFVFGQSGAGNNWAKGHYTEGAEL+DAVLDVVRKE ENCDCLQGFQ
Sbjct: 89 DNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGM 148
Query: 442 XXXXXXKIREEYPDRIMNTYSVAPRPK 522
KIREEYPDR+M T+SV P PK
Sbjct: 149 GTLLISKIREEYPDRMMLTFSVFPSPK 175
Score = 108 bits (260), Expect = 3e-24
Identities = 50/72 (69%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
Frame = +2
Query: 41 FWEIISEEHGIDPTGVYRGTS-DLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGT 217
FWE+I +EHG+DPTG Y G S DLQLERI+VYYNEAS GG+YVPRA+L+DLEPGT
Sbjct: 20 FWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEAS------GGRYVPRAVLMDLEPGT 73
Query: 218 MDAVRSGAYGQL 253
MD++RSG YGQ+
Sbjct: 74 MDSIRSGPYGQI 85
Score = 87.0 bits (206), Expect = 1e-17
Identities = 38/47 (80%), Positives = 42/47 (89%)
Frame = +3
Query: 510 PSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKV 650
PSPKVSDTVVEPYNA LS+HQLVEN DE +DNEALYDIC+RTLK+
Sbjct: 172 PSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL 218
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 131 bits (317), Expect = 3e-31
Identities = 61/87 (70%), Positives = 64/87 (73%)
Frame = +1
Query: 262 DNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXX 441
DNFVFGQSGAGNNWAKGHYTEGAEL+DAVLDVVRKE ENCDCLQGFQ
Sbjct: 89 DNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGM 148
Query: 442 XXXXXXKIREEYPDRIMNTYSVAPRPK 522
KIREEYPDR+M T+SV P PK
Sbjct: 149 GTLLISKIREEYPDRMMLTFSVFPSPK 175
Score = 105 bits (251), Expect = 3e-23
Identities = 49/72 (68%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
Frame = +2
Query: 41 FWEIISEEHGIDPTGVYRG-TSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGT 217
FWE+I +EHGID TG Y G T+DLQLERI+VYYNEAS GG+YVPRA+L+DLEPGT
Sbjct: 20 FWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEAS------GGRYVPRAVLMDLEPGT 73
Query: 218 MDAVRSGAYGQL 253
MD++RSG +GQ+
Sbjct: 74 MDSIRSGPFGQI 85
Score = 87.0 bits (206), Expect = 1e-17
Identities = 38/47 (80%), Positives = 42/47 (89%)
Frame = +3
Query: 510 PSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKV 650
PSPKVSDTVVEPYNA LS+HQLVEN DE +DNEALYDIC+RTLK+
Sbjct: 172 PSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL 218
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 130 bits (315), Expect = 6e-31
Identities = 60/87 (68%), Positives = 64/87 (73%)
Frame = +1
Query: 262 DNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXX 441
DNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKE ENCDCLQGFQ
Sbjct: 88 DNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGM 147
Query: 442 XXXXXXKIREEYPDRIMNTYSVAPRPK 522
KIREEYPDR+M T+SV P PK
Sbjct: 148 GTLLISKIREEYPDRMMMTFSVFPSPK 174
Score = 100 bits (239), Expect = 1e-21
Identities = 47/71 (66%), Positives = 57/71 (80%)
Frame = +2
Query: 41 FWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTM 220
FWE+I EHGID TG G +DLQLERI+VY+NEAS GGKYVPRA+L+DLEPGTM
Sbjct: 20 FWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEAS------GGKYVPRAVLMDLEPGTM 73
Query: 221 DAVRSGAYGQL 253
D++RSG +GQ+
Sbjct: 74 DSLRSGPFGQI 84
Score = 89.0 bits (211), Expect = 2e-18
Identities = 39/49 (79%), Positives = 43/49 (87%)
Frame = +3
Query: 510 PSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPN 656
PSPKVSDTVVEPYNA LS+HQLVEN DE +DNEALYDIC+RTLK+ N
Sbjct: 171 PSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLAN 219
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 130 bits (315), Expect = 6e-31
Identities = 60/87 (68%), Positives = 64/87 (73%)
Frame = +1
Query: 262 DNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXX 441
DNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKE ENCDCLQGFQ
Sbjct: 88 DNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGM 147
Query: 442 XXXXXXKIREEYPDRIMNTYSVAPRPK 522
KIREEYPDR+M T+SV P PK
Sbjct: 148 GTLLISKIREEYPDRMMMTFSVFPSPK 174
Score = 103 bits (246), Expect = 1e-22
Identities = 47/71 (66%), Positives = 58/71 (81%)
Frame = +2
Query: 41 FWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTM 220
FWE+++ EHGID TG Y G S+LQLER++VYYNEAS G+YVPRA+L+DLEPGTM
Sbjct: 20 FWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASC------GRYVPRAVLMDLEPGTM 73
Query: 221 DAVRSGAYGQL 253
D+VRSG YGQ+
Sbjct: 74 DSVRSGPYGQI 84
Score = 87.0 bits (206), Expect = 1e-17
Identities = 38/47 (80%), Positives = 42/47 (89%)
Frame = +3
Query: 510 PSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKV 650
PSPKVSDTVVEPYNA LS+HQLVEN DE +DNEALYDIC+RTLK+
Sbjct: 171 PSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL 217
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 130 bits (314), Expect = 8e-31
Identities = 60/87 (68%), Positives = 64/87 (73%)
Frame = +1
Query: 262 DNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXX 441
DNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKE ENCDCLQGFQ
Sbjct: 88 DNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGM 147
Query: 442 XXXXXXKIREEYPDRIMNTYSVAPRPK 522
KIREEYPDR+M T+SV P PK
Sbjct: 148 GTLLISKIREEYPDRMMLTFSVFPSPK 174
Score = 105 bits (252), Expect = 3e-23
Identities = 48/70 (68%), Positives = 57/70 (81%)
Frame = +2
Query: 41 FWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTM 220
FWE++ EHGIDPTG Y G SDLQLERI+VYYNEAS G++VPRA+L+DLEPGTM
Sbjct: 20 FWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASC------GRFVPRAVLMDLEPGTM 73
Query: 221 DAVRSGAYGQ 250
D++RSG YGQ
Sbjct: 74 DSLRSGPYGQ 83
Score = 87.0 bits (206), Expect = 1e-17
Identities = 38/47 (80%), Positives = 42/47 (89%)
Frame = +3
Query: 510 PSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKV 650
PSPKVSDTVVEPYNA LS+HQLVEN DE +DNEALYDIC+RTLK+
Sbjct: 171 PSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL 217
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 130 bits (314), Expect = 8e-31
Identities = 60/87 (68%), Positives = 64/87 (73%)
Frame = +1
Query: 262 DNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXX 441
DNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKE ENCDCLQGFQ
Sbjct: 88 DNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGM 147
Query: 442 XXXXXXKIREEYPDRIMNTYSVAPRPK 522
KIREEYPDR+M T+SV P PK
Sbjct: 148 GTLLISKIREEYPDRMMLTFSVFPSPK 174
Score = 105 bits (252), Expect = 3e-23
Identities = 48/70 (68%), Positives = 57/70 (81%)
Frame = +2
Query: 41 FWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTM 220
FWE++ EHGIDPTG Y G SDLQLERI+VYYNEAS G++VPRA+L+DLEPGTM
Sbjct: 20 FWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASC------GRFVPRAVLMDLEPGTM 73
Query: 221 DAVRSGAYGQ 250
D++RSG YGQ
Sbjct: 74 DSLRSGPYGQ 83
Score = 87.0 bits (206), Expect = 1e-17
Identities = 38/47 (80%), Positives = 42/47 (89%)
Frame = +3
Query: 510 PSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKV 650
PSPKVSDTVVEPYNA LS+HQLVEN DE +DNEALYDIC+RTLK+
Sbjct: 171 PSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL 217
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 130 bits (314), Expect = 8e-31
Identities = 60/87 (68%), Positives = 64/87 (73%)
Frame = +1
Query: 262 DNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXX 441
DNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKE ENCDCLQGFQ
Sbjct: 88 DNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGM 147
Query: 442 XXXXXXKIREEYPDRIMNTYSVAPRPK 522
KIREEYPDR+M T+SV P PK
Sbjct: 148 GTLLISKIREEYPDRMMLTFSVFPSPK 174
Score = 103 bits (247), Expect = 1e-22
Identities = 46/71 (64%), Positives = 58/71 (81%)
Frame = +2
Query: 41 FWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTM 220
FWE++ EHGID TG Y+G +DLQLER++VYYNEAS G++VPRA+L+DLEPGTM
Sbjct: 20 FWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASC------GRFVPRAVLMDLEPGTM 73
Query: 221 DAVRSGAYGQL 253
D+VRSG YGQ+
Sbjct: 74 DSVRSGPYGQI 84
Score = 87.0 bits (206), Expect = 1e-17
Identities = 38/47 (80%), Positives = 42/47 (89%)
Frame = +3
Query: 510 PSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKV 650
PSPKVSDTVVEPYNA LS+HQLVEN DE +DNEALYDIC+RTLK+
Sbjct: 171 PSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL 217
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 126 bits (305), Expect = 1e-29
Identities = 59/87 (67%), Positives = 63/87 (72%)
Frame = +1
Query: 262 DNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXX 441
DNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKE EN DCLQGFQ
Sbjct: 88 DNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENSDCLQGFQVCHSLGGGTGSGM 147
Query: 442 XXXXXXKIREEYPDRIMNTYSVAPRPK 522
KIREEYPDR+M T+SV P PK
Sbjct: 148 GTLLISKIREEYPDRMMMTFSVFPSPK 174
Score = 103 bits (246), Expect = 1e-22
Identities = 48/71 (67%), Positives = 57/71 (80%)
Frame = +2
Query: 41 FWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTM 220
FWE+I +EHGID TG Y G S LQLERI VY+NEA SGGKYVPRA+L+DLEPGTM
Sbjct: 20 FWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEA------SGGKYVPRAVLMDLEPGTM 73
Query: 221 DAVRSGAYGQL 253
D++RSG +GQ+
Sbjct: 74 DSLRSGPFGQI 84
Score = 89.0 bits (211), Expect = 2e-18
Identities = 39/49 (79%), Positives = 43/49 (87%)
Frame = +3
Query: 510 PSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPN 656
PSPKVSDTVVEPYNA LS+HQLVEN DE +DNEALYDIC+RTLK+ N
Sbjct: 171 PSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLAN 219
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 68.9 bits (161), Expect = 3e-12
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +3
Query: 510 PSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKV 650
PSP+VS +VVEPYN+VLS H L+E+TD + +DNEA+YDIC R+L +
Sbjct: 173 PSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLNI 219
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/90 (31%), Positives = 43/90 (47%)
Frame = +1
Query: 262 DNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXX 441
+ + G+ A NN+A+GHYT G E+VD LD +RK +NC LQGF
Sbjct: 90 EQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGL 149
Query: 442 XXXXXXKIREEYPDRIMNTYSVAPRPKYQT 531
++ +Y + ++V P P+ T
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +2
Query: 44 WEIISEEHGIDPTGVYRGTSDLQL--ERISVYYNEASVATAESGGKYVPRAILLDLEPGT 217
WE+ EHGI P G G + + + +++E GK+VPRA+ +DLEP
Sbjct: 21 WELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGA------GKHVPRAVFVDLEPTV 74
Query: 218 MDAVRSGAYGQL 253
+D VR+G Y QL
Sbjct: 75 IDEVRTGTYRQL 86
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 68.9 bits (161), Expect = 3e-12
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +3
Query: 510 PSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKV 650
PSP+VS +VVEPYN+VLS H L+E+TD + +DNEA+YDIC R+L +
Sbjct: 173 PSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLNI 219
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/90 (31%), Positives = 43/90 (47%)
Frame = +1
Query: 262 DNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXX 441
+ + G+ A NN+A+GHYT G E+VD LD +RK +NC LQGF
Sbjct: 90 EQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGL 149
Query: 442 XXXXXXKIREEYPDRIMNTYSVAPRPKYQT 531
++ +Y + ++V P P+ T
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +2
Query: 44 WEIISEEHGIDPTGVYRGTSDLQL--ERISVYYNEASVATAESGGKYVPRAILLDLEPGT 217
WE+ EHGI P G G + + + +++E GK+VPRA+ +DLEP
Sbjct: 21 WELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGA------GKHVPRAVFVDLEPTV 74
Query: 218 MDAVRSGAYGQL 253
+D VR+G Y QL
Sbjct: 75 IDEVRTGTYRQL 86
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 68.9 bits (161), Expect = 3e-12
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +3
Query: 510 PSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKV 650
PSP+VS +VVEPYN+VLS H L+E+TD + +DNEA+YDIC R+L +
Sbjct: 173 PSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLSI 219
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/90 (31%), Positives = 43/90 (47%)
Frame = +1
Query: 262 DNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXX 441
+ + G+ A NN+A+GHYT G E+VD LD +RK +NC LQGF
Sbjct: 90 EQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGL 149
Query: 442 XXXXXXKIREEYPDRIMNTYSVAPRPKYQT 531
++ +Y + ++V P P+ T
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/70 (41%), Positives = 38/70 (54%)
Frame = +2
Query: 44 WEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTMD 223
WE+ EHGI P G + SD + +N T GK+VPRA+ +DLEP +D
Sbjct: 21 WELYCLEHGIQPDG--QMPSDKTVGGGDDAFNTFFSETG--AGKHVPRAVFVDLEPTVID 76
Query: 224 AVRSGAYGQL 253
VR+G Y QL
Sbjct: 77 EVRTGTYRQL 86
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 68.9 bits (161), Expect = 3e-12
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +3
Query: 510 PSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKV 650
PSP+VS +VVEPYN+VLS H L+E+TD + +DNEA+YDIC R+L +
Sbjct: 173 PSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLSI 219
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/90 (31%), Positives = 43/90 (47%)
Frame = +1
Query: 262 DNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXX 441
+ + G+ A NN+A+GHYT G E+VD LD +RK +NC LQGF
Sbjct: 90 EQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGL 149
Query: 442 XXXXXXKIREEYPDRIMNTYSVAPRPKYQT 531
++ +Y + ++V P P+ T
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/70 (41%), Positives = 38/70 (54%)
Frame = +2
Query: 44 WEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTMD 223
WE+ EHGI P G + SD + +N T GK+VPRA+ +DLEP +D
Sbjct: 21 WELYCLEHGIQPDG--QMPSDKTVGGGDDAFNTFFSETG--AGKHVPRAVFVDLEPTVID 76
Query: 224 AVRSGAYGQL 253
VR+G Y QL
Sbjct: 77 EVRTGTYRQL 86
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 67.7 bits (158), Expect = 6e-12
Identities = 29/47 (61%), Positives = 37/47 (78%)
Frame = +3
Query: 510 PSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKV 650
PSP+VS VVEPYN+VLS H L+E+TD +DNEA+YDIC R+L +
Sbjct: 173 PSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDI 219
Score = 56.8 bits (131), Expect = 1e-08
Identities = 28/90 (31%), Positives = 43/90 (47%)
Frame = +1
Query: 262 DNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXX 441
+ + G+ A NN+A+GHYT G E+VD LD VRK +NC LQGF
Sbjct: 90 EQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGL 149
Query: 442 XXXXXXKIREEYPDRIMNTYSVAPRPKYQT 531
++ +Y + +++ P P+ T
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTIYPSPQVST 179
Score = 54.0 bits (124), Expect = 8e-08
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Frame = +2
Query: 44 WEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAESG-GKYVPRAILLDLEPGTM 220
WE+ EHGI P G+ SD + V ++ + +E+G GK+VPRA+ +DLEP +
Sbjct: 21 WELYCLEHGIQPDGMM--PSDTT---VGVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVI 75
Query: 221 DAVRSGAYGQL 253
D VR+G Y QL
Sbjct: 76 DEVRTGTYRQL 86
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 67.7 bits (158), Expect = 6e-12
Identities = 29/47 (61%), Positives = 37/47 (78%)
Frame = +3
Query: 510 PSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKV 650
PSP+VS VVEPYN+VLS H L+E+TD +DNEA+YDIC R+L +
Sbjct: 173 PSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDI 219
Score = 56.8 bits (131), Expect = 1e-08
Identities = 28/90 (31%), Positives = 43/90 (47%)
Frame = +1
Query: 262 DNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXX 441
+ + G+ A NN+A+GHYT G E+VD LD VRK +NC LQGF
Sbjct: 90 EQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGL 149
Query: 442 XXXXXXKIREEYPDRIMNTYSVAPRPKYQT 531
++ +Y + +++ P P+ T
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTIYPSPQVST 179
Score = 54.0 bits (124), Expect = 8e-08
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Frame = +2
Query: 44 WEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAESG-GKYVPRAILLDLEPGTM 220
WE+ EHGI P G+ SD + V ++ + +E+G GK+VPRA+ +DLEP +
Sbjct: 21 WELYCLEHGIQPDGMM--PSDTT---VGVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVI 75
Query: 221 DAVRSGAYGQL 253
D VR+G Y QL
Sbjct: 76 DEVRTGTYRQL 86
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 67.7 bits (158), Expect = 6e-12
Identities = 29/47 (61%), Positives = 37/47 (78%)
Frame = +3
Query: 510 PSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKV 650
PSP+VS VVEPYN+VLS H L+E+TD +DNEA+YDIC R+L +
Sbjct: 173 PSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDI 219
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +1
Query: 262 DNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGF 399
+ + G+ A NN+A+GHYT G E+VD L+ +RK +NC LQGF
Sbjct: 90 EQLISGKEDAANNFARGHYTVGREIVDTCLERLRKLADNCTGLQGF 135
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +2
Query: 44 WEIISEEHGIDPTGVYRGTSDLQL--ERISVYYNEASVATAESGGKYVPRAILLDLEPGT 217
WE+ EHGI P G S + + + +++E S G++VPRA+ LDLEP
Sbjct: 21 WELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETS------SGQHVPRAVFLDLEPTV 74
Query: 218 MDAVRSGAYGQL 253
+D VR+G Y QL
Sbjct: 75 IDEVRTGTYRQL 86
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 48.0 bits (109), Expect = 5e-06
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +1
Query: 286 GAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKI 465
GAGNNWA G Y +G + + ++D++ +E + D L+GF +
Sbjct: 99 GAGNNWASG-YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETL 157
Query: 466 REEYPDRIMNTYSVAP 513
+ Y +++ TYSV P
Sbjct: 158 NDRYSKKLVQTYSVFP 173
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/71 (30%), Positives = 38/71 (53%)
Frame = +2
Query: 41 FWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTM 220
FW+ + EHGI G+ + +R V++ +A Y+PRA+L+DLEP +
Sbjct: 21 FWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQAD------DQHYIPRALLIDLEPRVI 74
Query: 221 DAVRSGAYGQL 253
+ +++G Y L
Sbjct: 75 NGIQNGEYRNL 85
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +3
Query: 519 KVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPN 656
+ SD VV+PYN++L++ +L N D +DN AL I L + N
Sbjct: 177 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLTN 222
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 48.0 bits (109), Expect = 5e-06
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +1
Query: 286 GAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKI 465
GAGNNWA G Y +G + + ++D++ +E + D L+GF +
Sbjct: 99 GAGNNWASG-YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETL 157
Query: 466 REEYPDRIMNTYSVAP 513
+ Y +++ TYSV P
Sbjct: 158 NDRYSKKLVQTYSVFP 173
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/71 (30%), Positives = 38/71 (53%)
Frame = +2
Query: 41 FWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTM 220
FW+ + EHGI G+ + +R V++ +A Y+PRA+L+DLEP +
Sbjct: 21 FWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQAD------DQHYIPRALLIDLEPRVI 74
Query: 221 DAVRSGAYGQL 253
+ +++G Y L
Sbjct: 75 NGIQNGDYRNL 85
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +3
Query: 519 KVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPN 656
+ SD VV+PYN++L++ +L N D +DN AL I L + N
Sbjct: 177 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALGRIAVERLHLTN 222
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 355 VVRKECENCDCLQGF 399
VVRKE ENC+CLQ F
Sbjct: 7 VVRKEAENCNCLQVF 21
>At3g07470.1 68416.m00891 expressed protein contains Pfam profile
PF04398: Protein of unknown function, DUF538
Length = 169
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 68 GIDPTGVYRGTSDLQLERISVYYNEASVATAES 166
GI P GV T D++ R SVY N+A A E+
Sbjct: 43 GIFPKGVREFTFDVETGRFSVYLNQACEAKYET 75
>At2g45490.1 68415.m05658 protein kinase, putative contains protein
kinase domain, Pfam:PF00069; similar to protein kinase
p46XlEg22 [Xenopus laevis] gi|609280|emb|CAA78914
Length = 288
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 570 QLVENTDETYCIDNEALYDICYRTL 644
++VEN D Y +DN L +CY L
Sbjct: 187 EMVENRDHDYAVDNWTLGILCYEFL 211
>At5g20860.1 68418.m02477 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 512
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +3
Query: 525 SDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKV 650
S+ ++ P ++ + +LV D TY + + ++ D C R +K+
Sbjct: 77 SNLLIPPLSSSMGSSKLVSLEDSTYTLPSPSVSDSCERLMKM 118
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,498,326
Number of Sequences: 28952
Number of extensions: 206129
Number of successful extensions: 669
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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