Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0866
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55670| Best HMM Match : zf-C2H2 (HMM E-Value=1.6e-29)               30   2.3  
SB_52511| Best HMM Match : RVT_1 (HMM E-Value=0.00044)                 30   2.3  
SB_39054| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_55670| Best HMM Match : zf-C2H2 (HMM E-Value=1.6e-29)
          Length = 637

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 237 SPTPARDAVHYRLVHLPIIHDVHVNFSPHVSSNREPVHHEG 115
           +P  A    H+ + H P++H +H N   H SS +EP H +G
Sbjct: 289 NPRGATVPRHHNMFHGPVVHPLHPN---HYSSLQEP-HRDG 325


>SB_52511| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
          Length = 513

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 212 SITGWYIFLLFMTCT*TSPHMYPAIENPCTT-RGCSFSFEAMNLR 81
           ++ G  +FLLFMTC   SP  +    + C   R  +F  + +NL+
Sbjct: 354 TMLGPTLFLLFMTCRTLSPQTHKLFADDCVLYRNVNFENDQLNLQ 398


>SB_39054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 803

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -2

Query: 274 RHADRDLLMSAAESHTCARCGPLPVGTSSYYS*RARKLLPTCIQQSRTRAPR 119
           R   R  L  +A +H C RC P    + +    R R+L P C+  SR++  R
Sbjct: 418 REFPRPSLSFSALTHRCCRCVPEWAWSGAAARRRIRQLSPYCLCFSRSQRDR 469


>SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/72 (20%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +2

Query: 269 VPAAVF---PKNQIMQNTLRAYMEYHMKTFYTSATSHYIRSSQLFHSPLCAAPALFLLSR 439
           +P+A+     +N ++ + +++  ++    FYT+  + Y+ SS +   PL + P     + 
Sbjct: 324 IPSAILISTAQNHVLDSPVKSLRKWVDGCFYTAPVASYMESSGVAGKPLPSTPKQRTSTE 383

Query: 440 SDPVGAEPSNRS 475
              + + PS++S
Sbjct: 384 IPVITSAPSSQS 395


>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 116 PSWCTGSRLLDTCGEKF 166
           PS C G RLLD C +KF
Sbjct: 50  PSRCRGLRLLDYCSDKF 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,246,184
Number of Sequences: 59808
Number of extensions: 461733
Number of successful extensions: 1636
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1619
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)