Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0866
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34750.1 68415.m04267 RNA polymerase I specific transcription...    31   1.1  
At2g15695.1 68415.m01797 expressed protein contains Pfam PF05705...    30   1.4  
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil...    29   3.3  
At5g44250.1 68418.m05413 expressed protein contains Pfam PF05705...    28   5.8  

>At2g34750.1 68415.m04267 RNA polymerase I specific transcription
           initiation factor RRN3 family protein contains Pfam
           PF05327: RNA polymerase I specific transcription
           initiation factor RRN3;  similar to RRN3 (GI:7670100)
           [Homo sapiens] similar to RNA polymerase I specific
           transcription initiation factor RRN3 (Swiss-Prot:P36070)
           [Saccharomyces cerevisiae]
          Length = 613

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 576 EVLLRVVSVMLHVGRLIPALPRALIPMLHQE 484
           +VL RV + +L +  L+P  P  L+PML Q+
Sbjct: 161 DVLSRVHAALLKISILVPLTPSRLVPMLFQQ 191


>At2g15695.1 68415.m01797 expressed protein contains Pfam PF05705:
           Eukaryotic protein of unknown function (DUF829)
          Length = 420

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 523 WDKSPHVQHYTHHPKEYLTALYAHLD 600
           W  SPH  HY H+P +Y   +   L+
Sbjct: 248 WKNSPHAGHYAHNPIQYRAVISNFLE 273


>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
           to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
           {Homo sapiens}; contains Pfam profile PF02127:
           Aminopeptidase I zinc metalloprotease (M18)
          Length = 526

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 201 LVHLPIIHDVHVNFSPHVSSNREPVHHEGLLI 106
           LV   + H VH NF+     N  P  H+GL+I
Sbjct: 392 LVSADMAHGVHPNFADKHEENHRPQLHKGLVI 423


>At5g44250.1 68418.m05413 expressed protein contains Pfam PF05705:
           Eukaryotic protein of unknown function (DUF829)
          Length = 403

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 523 WDKSPHVQHYTHHPKEYLTALYAHLD-ASGLISQPEKIQRRIAL*PSTH 666
           W+ SPH  HY ++  +Y  A+   L  A+ + SQ  +   R A+  + H
Sbjct: 240 WNDSPHCGHYRYNQVDYKAAVSEFLSKAASVYSQKTRSLDREAMKGTCH 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,052,875
Number of Sequences: 28952
Number of extensions: 305310
Number of successful extensions: 808
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)