Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0865
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 102 3e-22
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 94 7e-20
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 94 7e-20
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 79 2e-15
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 79 3e-15
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 75 6e-14
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 75 6e-14
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 75 6e-14
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 73 1e-13
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 68 7e-12
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 68 7e-12
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 62 3e-10
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 60 2e-09
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 59 3e-09
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 56 2e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 51 9e-07
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 50 2e-06
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 50 2e-06
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 50 2e-06
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 50 2e-06
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 49 3e-06
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 48 6e-06
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 48 6e-06
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 47 1e-05
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 47 1e-05
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 47 1e-05
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 46 2e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 46 2e-05
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 46 2e-05
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 46 2e-05
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 46 2e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 46 3e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 46 3e-05
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 45 6e-05
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 44 7e-05
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 44 7e-05
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 44 1e-04
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 44 1e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 44 1e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 43 2e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 42 4e-04
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 42 4e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 42 5e-04
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 40 0.001
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 40 0.001
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 40 0.002
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.004
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 37 0.011
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 37 0.011
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 36 0.026
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 36 0.026
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 36 0.035
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 36 0.035
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 35 0.060
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 35 0.060
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 33 0.14
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 33 0.14
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 33 0.14
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 33 0.24
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 32 0.43
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 32 0.43
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 32 0.43
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 30 1.3
At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / i... 30 1.7
At4g27850.1 68417.m03999 proline-rich family protein contains pr... 29 3.0
At1g13560.2 68414.m01589 aminoalcoholphosphotransferase (AAPT1) ... 29 4.0
At1g13560.1 68414.m01590 aminoalcoholphosphotransferase (AAPT1) ... 29 4.0
At3g59750.1 68416.m06666 receptor lectin kinase, putative simila... 28 5.2
At3g19515.1 68416.m02473 expressed protein 28 5.2
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.2
At2g25460.1 68415.m03049 expressed protein 28 5.2
At3g54380.2 68416.m06010 SAC3/GANP family protein contains Pfam ... 27 9.2
At3g54380.1 68416.m06009 SAC3/GANP family protein contains Pfam ... 27 9.2
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 27 9.2
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 102 bits (244), Expect = 3e-22
Identities = 47/94 (50%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Frame = +1
Query: 232 SPR-LGFCLLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGDEVHNPIQYFEEANF 408
SPR L L PF KNFY P V + EVEEYR E+TV G ++ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 409 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
PDYV + VK G+ EPTPIQ+QGWP+AM G++L+
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLI 140
Score = 99.5 bits (237), Expect = 2e-21
Identities = 44/69 (63%), Positives = 56/69 (81%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 677
++ G+A+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG
Sbjct: 137 RDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFG 196
Query: 678 HTSYVRNTC 704
+S ++ TC
Sbjct: 197 SSSKIKTTC 205
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 94.3 bits (224), Expect = 7e-20
Identities = 39/92 (42%), Positives = 60/92 (65%)
Frame = +1
Query: 235 PRLGFCLLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGDEVHNPIQYFEEANFPD 414
P+ F L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 415 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
Score = 91.5 bits (217), Expect = 5e-19
Identities = 41/69 (59%), Positives = 55/69 (79%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 677
++ G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFG 262
Query: 678 HTSYVRNTC 704
S VR+TC
Sbjct: 263 LRSGVRSTC 271
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 94.3 bits (224), Expect = 7e-20
Identities = 39/92 (42%), Positives = 60/92 (65%)
Frame = +1
Query: 235 PRLGFCLLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGDEVHNPIQYFEEANFPD 414
P+ F L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 415 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
Score = 91.5 bits (217), Expect = 5e-19
Identities = 41/69 (59%), Positives = 55/69 (79%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 677
++ G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFG 262
Query: 678 HTSYVRNTC 704
S VR+TC
Sbjct: 263 LRSGVRSTC 271
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 79.4 bits (187), Expect = 2e-15
Identities = 36/62 (58%), Positives = 43/62 (69%)
Frame = +3
Query: 510 GVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 689
GVAKTGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F
Sbjct: 571 GVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLG 630
Query: 690 VR 695
+R
Sbjct: 631 IR 632
Score = 64.1 bits (149), Expect = 9e-11
Identities = 28/84 (33%), Positives = 46/84 (54%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGDEVHNPIQYFEEANFPDYVQQGVKT 438
+PF KNFY + + + EV YR E+ V G +V PI+++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLV 510
+ Y++P PIQ Q PI MSG++ +
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRDCI 570
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/48 (70%), Positives = 40/48 (83%)
Frame = +3
Query: 510 GVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 653
GVAKTGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI
Sbjct: 438 GVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 485
Score = 64.5 bits (150), Expect = 7e-11
Identities = 29/84 (34%), Positives = 46/84 (54%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGDEVHNPIQYFEEANFPDYVQQGVKT 438
+PF KNFY + + + V YR E+ V G +V PIQ++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLV 510
+ Y++P PIQAQ PI MSG++ +
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRDCI 437
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 74.5 bits (175), Expect = 6e-14
Identities = 34/76 (44%), Positives = 45/76 (59%)
Frame = +1
Query: 286 PHPTVLKRSPYEVEEYRNNHEVTVSGDEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 465
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 466 QAQGWPIAMSGKNLVA 513
QAQ WPIAM G+++VA
Sbjct: 185 QAQSWPIAMQGRDIVA 200
Score = 66.9 bits (156), Expect = 1e-11
Identities = 33/69 (47%), Positives = 44/69 (63%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 677
++ +AKTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
Query: 678 HTSYVRNTC 704
+S + TC
Sbjct: 255 RSSRISCTC 263
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 74.5 bits (175), Expect = 6e-14
Identities = 34/76 (44%), Positives = 45/76 (59%)
Frame = +1
Query: 286 PHPTVLKRSPYEVEEYRNNHEVTVSGDEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 465
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 466 QAQGWPIAMSGKNLVA 513
QAQ WPIAM G+++VA
Sbjct: 185 QAQSWPIAMQGRDIVA 200
Score = 66.9 bits (156), Expect = 1e-11
Identities = 33/69 (47%), Positives = 44/69 (63%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 677
++ +AKTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
Query: 678 HTSYVRNTC 704
+S + TC
Sbjct: 255 RSSRISCTC 263
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 74.5 bits (175), Expect = 6e-14
Identities = 34/76 (44%), Positives = 45/76 (59%)
Frame = +1
Query: 286 PHPTVLKRSPYEVEEYRNNHEVTVSGDEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 465
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 466 QAQGWPIAMSGKNLVA 513
QAQ WPIAM G+++VA
Sbjct: 185 QAQSWPIAMQGRDIVA 200
Score = 66.9 bits (156), Expect = 1e-11
Identities = 33/69 (47%), Positives = 44/69 (63%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 677
++ +AKTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
Query: 678 HTSYVRNTC 704
+S + TC
Sbjct: 255 RSSRISCTC 263
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 73.3 bits (172), Expect = 1e-13
Identities = 33/59 (55%), Positives = 44/59 (74%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 674
++ G+AKTGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F
Sbjct: 266 RDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKF 324
Score = 71.3 bits (167), Expect = 6e-13
Identities = 28/84 (33%), Positives = 49/84 (58%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGDEVHNPIQYFEEANFPDYVQQGVKT 438
+P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLV 510
Y++PT IQ Q PI +SG++++
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRDVI 269
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 67.7 bits (158), Expect = 7e-12
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Frame = +1
Query: 268 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGDEVHNPIQYFEEANFPDYVQQGVK 435
NK+ PH P V SP E+ YR HEVT +G+ + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 436 TMGYKEPTPIQAQGWPIAMSGKNLVA 513
+ G+ PTPIQAQ WPIA+ +++VA
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVA 477
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/69 (47%), Positives = 45/69 (65%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 677
++ +AKTGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG
Sbjct: 473 RDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFG 531
Query: 678 HTSYVRNTC 704
+S + TC
Sbjct: 532 RSSRISCTC 540
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 67.7 bits (158), Expect = 7e-12
Identities = 30/64 (46%), Positives = 45/64 (70%), Gaps = 3/64 (4%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAA 668
++ G+A+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++
Sbjct: 351 RDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETV 410
Query: 669 DFGH 680
F H
Sbjct: 411 KFAH 414
Score = 40.7 bits (91), Expect = 0.001
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = +1
Query: 331 YRNNHEVTVSGDEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 62.5 bits (145), Expect = 3e-10
Identities = 32/69 (46%), Positives = 42/69 (60%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 677
++ +AKTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG
Sbjct: 267 RDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFG 325
Query: 678 HTSYVRNTC 704
+S + C
Sbjct: 326 KSSKISCAC 334
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +1
Query: 430 VKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
V + G+ P+PIQAQ WPIAM +++VA
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVA 271
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 325 EEYRNNHEVTVSGDEVHNPIQYFEEANFPD 414
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 59.7 bits (138), Expect = 2e-09
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Frame = +3
Query: 432 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQP---PIRRGD 602
KD G+ L ++ G+A TGSGKTL ++LP I+ + PI G+
Sbjct: 113 KDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGE 172
Query: 603 GPIALVLAPTRELAQQIQQVAADF 674
GPIALV+ P+RELA+Q V F
Sbjct: 173 GPIALVICPSRELAKQTYDVVEQF 196
Score = 58.0 bits (134), Expect = 6e-09
Identities = 27/89 (30%), Positives = 50/89 (56%)
Frame = +1
Query: 244 GFCLLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGDEVHNPIQYFEEANFPDYVQ 423
G +P + ++ P V K S +++ R +TV+G+++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 424 QGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
+ +K G PTPIQ QG P+ +SG++++
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMI 138
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVA 665
++ G+AKTGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V
Sbjct: 152 RDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVL 211
Query: 666 ADFGHTSYVRNTC 704
+ G +++ C
Sbjct: 212 REAGEPCGLKSIC 224
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/43 (34%), Positives = 28/43 (65%)
Frame = +1
Query: 382 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
++ F E+N P+ V KT +++P+PIQ+ WP + G++L+
Sbjct: 115 LKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLI 155
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAA 668
++ G+A TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q +V
Sbjct: 184 RDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVE 243
Query: 669 DF 674
F
Sbjct: 244 QF 245
Score = 54.4 bits (125), Expect = 7e-08
Identities = 24/77 (31%), Positives = 44/77 (57%)
Frame = +1
Query: 280 YDPHPTVLKRSPYEVEEYRNNHEVTVSGDEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 459
+ P + K S + + R + V+GD++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 460 PIQAQGWPIAMSGKNLV 510
PIQ QG P+ ++G++++
Sbjct: 171 PIQVQGLPVILAGRDMI 187
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 50.8 bits (116), Expect = 9e-07
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +3
Query: 516 AKTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGH 680
A TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + H
Sbjct: 74 APTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLH 129
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +1
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLV 510
MG++ PT +QAQ P+ +SG++++
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVL 71
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 50.0 bits (114), Expect = 2e-06
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +3
Query: 432 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGP- 608
KD G + + L K+ AKTG+GKT+A++LPAI + PP R
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQP 457
Query: 609 --IALVLAPTRELAQQ 650
I LV+ PTRELA Q
Sbjct: 458 PIIVLVVCPTRELASQ 473
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQ 659
++ G A+TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++
Sbjct: 142 RDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK 196
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 49.6 bits (113), Expect = 2e-06
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Frame = +3
Query: 426 RCKDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRR--- 596
+ K NG++ +S + G A+TG GKTLA++LP + + N P +
Sbjct: 110 KLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKM 169
Query: 597 --GDGPIALVLAPTRELAQQIQQVAADF 674
G P LVL PTRELA +QVAADF
Sbjct: 170 GYGRSPSVLVLLPTRELA---KQVAADF 194
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Frame = +3
Query: 432 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINN-QPPIRRGDGP 608
K G+++ + L + ++ G A+TG+GKTLA+ +P I I RG P
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNP 191
Query: 609 IALVLAPTRELAQQIQQ 659
LVLAPTRELA+Q+++
Sbjct: 192 QCLVLAPTRELARQVEK 208
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 49.2 bits (112), Expect = 3e-06
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 662
++ A+TGSGKT A+ P I I ++R G P+A++L+PTRELA QI
Sbjct: 197 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDE 256
Query: 663 AADFGHTSYVR 695
A F + + V+
Sbjct: 257 AKKFSYQTGVK 267
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +1
Query: 256 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGDEVHNPIQYFEEANFPDYVQQGV 432
+ PF + +P P ++ + + + + SGD V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 433 KTMGYKEPTPIQAQGWPIAMSGKNLVA 513
+ Y +PTP+Q PI + G++L+A
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMA 201
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 48.0 bits (109), Expect = 6e-06
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 662
++ A+TGSGKT A+ P I I I R G P+A++L+PTRELA QI
Sbjct: 184 RDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDE 243
Query: 663 AADFGHTSYVR 695
A F + + V+
Sbjct: 244 ARKFSYQTGVK 254
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +1
Query: 262 PF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGDEVHNPIQYFEEANFPDYVQQGVKT 438
PF N DP + + E Y + + SGD V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLVA 513
Y +PTP+Q PI +G++L+A
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMA 188
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 48.0 bits (109), Expect = 6e-06
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +3
Query: 432 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAI-VHINNQPPIRRGDGP 608
K+ G Q + + K+ G A+TGSGKTLA+++PA+ + + R G G
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG- 163
Query: 609 IALVLAPTRELAQQIQQVAAD 671
+V+ PTRELA Q + VA +
Sbjct: 164 -VIVICPTRELAIQTKNVAEE 183
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 47.2 bits (107), Expect = 1e-05
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = +3
Query: 432 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGD--G 605
KD G + + L K+ AKTG+GKT+A++LP+I + PP +
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRP 129
Query: 606 PI-ALVLAPTRELAQQ 650
PI ALV+ PTRELA Q
Sbjct: 130 PILALVICPTRELANQ 145
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 662
++ A+TGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 663 AADFGHTSYVR 695
A F + + V+
Sbjct: 249 AKKFSYQTGVK 259
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 349 VTVSGDEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 662
++ A+TGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 663 AADFGHTSYVR 695
A F + + V+
Sbjct: 249 AKKFSYQTGVK 259
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 349 VTVSGDEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/80 (35%), Positives = 43/80 (53%)
Frame = +3
Query: 432 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPI 611
K+ G R + + + ++ G A+TGSGKTLA+++PA V + + +G
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTG 228
Query: 612 ALVLAPTRELAQQIQQVAAD 671
LV+ PTRELA Q VA +
Sbjct: 229 VLVICPTRELAIQSYGVAKE 248
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
FE + D + +K MG+ T IQA+ P M G++++
Sbjct: 156 FESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVL 195
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 653
K+ AKTGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 36.7 bits (81), Expect = 0.015
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +1
Query: 319 EVEEYRNNHEVTVSGDEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 498
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 499 KNLVA 513
K++VA
Sbjct: 84 KDVVA 88
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/77 (36%), Positives = 44/77 (57%)
Frame = +3
Query: 429 CKDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGP 608
CK+ G+++ + + ++ G+A+TGSGKT A+ LP I+H + P G
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILHRLAEDPY----GV 127
Query: 609 IALVLAPTRELAQQIQQ 659
ALV+ PTRELA Q+ +
Sbjct: 128 FALVVTPTRELAFQLAE 144
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
FE ++ + K +G ++PTP+Q P ++G++++
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVL 99
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 650
K+ AKTG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTS 686
TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +VA H +
Sbjct: 158 TGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHA 216
Query: 687 YVRN 698
R+
Sbjct: 217 RFRS 220
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Frame = +1
Query: 334 RNNHEVTVSGDEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 501
R + + VSG+ + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 502 NLVA 513
A
Sbjct: 180 ECFA 183
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 650
+E A TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 179 RECFACAPTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Frame = +3
Query: 516 AKTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 683
A TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA F T
Sbjct: 60 AATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVST 116
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/66 (34%), Positives = 41/66 (62%)
Frame = +3
Query: 453 TDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 632
TD S++ + + ++ G A+TGSGKTLA+++P + ++ + DG ++++PT
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPT 152
Query: 633 RELAQQ 650
RELA Q
Sbjct: 153 RELAAQ 158
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 668
K A TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A
Sbjct: 148 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAK 207
Query: 669 DFG 677
G
Sbjct: 208 MLG 210
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 310 SPYEVEEYRNNHEVTVSGD--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 483
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 484 IAMSGKNLVA 513
A++GK+L+A
Sbjct: 143 AALTGKSLLA 152
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 668
K A TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A
Sbjct: 11 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAK 70
Query: 669 DFG 677
G
Sbjct: 71 MLG 73
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/61 (37%), Positives = 39/61 (63%)
Frame = +3
Query: 513 VAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 692
+A+TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G + +
Sbjct: 71 MARTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDL 127
Query: 693 R 695
R
Sbjct: 128 R 128
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
FE N V +K GYK PTPIQ + P+ +SG ++VA
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVA 70
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 5/53 (9%)
Frame = +3
Query: 516 AKTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQ 659
AKTG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++
Sbjct: 146 AKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEK 198
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Frame = +3
Query: 516 AKTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 665
A TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 61 AATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Frame = +3
Query: 438 NGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHI----NNQPPIRRGDG 605
+G+ + + L++ K+ AKTG+GK++A++LPAI + N+ + +
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAP 405
Query: 606 PIALVLAPTRELAQQI 653
AL+L PTRELA QI
Sbjct: 406 IFALILCPTRELASQI 421
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Frame = +3
Query: 495 WKEFSGVAKTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVA 665
+K+ + A TGSGKTLA+++P + + PP + + ++++PTREL+ QI VA
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVA 110
Query: 666 ADFGHT 683
F T
Sbjct: 111 QPFVST 116
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +1
Query: 352 TVSGDEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
TV G H F E N + + +T+GYK+PTPIQA P+A++G++L A
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCA 209
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/78 (30%), Positives = 40/78 (51%)
Frame = +3
Query: 429 CKDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGP 608
C+ G ++ ++ + + ++ A TGSGKT A+ LP + + +P +R
Sbjct: 182 CETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRP--KRVFAT 239
Query: 609 IALVLAPTRELAQQIQQV 662
L+L PTRELA QI +
Sbjct: 240 RVLILTPTRELAVQIHSM 257
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 41.5 bits (93), Expect = 5e-04
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Frame = +3
Query: 438 NGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHI----NNQPPIRRGDG 605
+G+ + + L++ K+ AKTG+GK++A++LPAI + N+ + +
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAP 452
Query: 606 PIALVLAPTRELAQQI 653
L+L PTRELA QI
Sbjct: 453 IFVLILCPTRELASQI 468
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = +3
Query: 435 DNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 614
+ G +R + + ++ AK G+GKT A+ +P + I+ + + A
Sbjct: 148 EKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----A 202
Query: 615 LVLAPTRELAQQIQQVAADFG 677
+++ PTRELA Q QV + G
Sbjct: 203 VIIVPTRELALQTSQVCKELG 223
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PKRVPAK 537
FE+ + G+ G++ P+PIQ + PIA++G++++A K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = +3
Query: 435 DNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 614
+ G +R + + ++ AK G+GKT A+ +P + I+ + + A
Sbjct: 148 EKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----A 202
Query: 615 LVLAPTRELAQQIQQVAADFG 677
+++ PTRELA Q QV + G
Sbjct: 203 VIIVPTRELALQTSQVCKELG 223
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PKRVPAK 537
FE+ + G+ G++ P+PIQ + PIA++G++++A K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Frame = +3
Query: 429 CKDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHI-----NNQPPIR 593
C+ G + + L + K+ G+A+TGSGKT A+ +P + + +++P
Sbjct: 24 CERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKG 83
Query: 594 RGDGP--IALVLAPTRELAQQIQQ 659
R P A VL+PTRELA QI +
Sbjct: 84 RRPDPAFFACVLSPTRELAIQIAE 107
Score = 34.3 bits (75), Expect = 0.080
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = +1
Query: 364 DEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
+E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++
Sbjct: 2 EEENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVI 50
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 662
TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +3
Query: 516 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 665
A+TGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 120 AQTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQI 653
++GSGKTLAY++P I + Q + G P +VL PT ELA Q+
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 35.9 bits (79), Expect = 0.026
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = +3
Query: 498 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 677
K A GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 35.9 bits (79), Expect = 0.026
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +3
Query: 516 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 671
AK G+GKT A+ +P + I+ + + + A++L PTRELA Q QV +
Sbjct: 198 AKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKE 244
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PKRVPAK 537
FE+ + +G+ G+++P+PIQ + PIA++G +++A K K
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 35.5 bits (78), Expect = 0.035
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +3
Query: 516 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 671
AK G+GKT A+ +P + I+ + + A++L PTRELA Q QV +
Sbjct: 168 AKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PKRVPAK 537
FE+ + +G+ G+++P+PIQ + PIA++G +++A K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 35.5 bits (78), Expect = 0.035
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +3
Query: 516 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 671
AK G+GKT A+ +P + I+ + + A++L PTRELA Q QV +
Sbjct: 168 AKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PKRVPAK 537
FE+ + +G+ G+++P+PIQ + PIA++G +++A K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 34.7 bits (76), Expect = 0.060
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 15/73 (20%)
Frame = +3
Query: 486 SYVWKEFSGVAKTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALV 620
+Y K+ G A+TGSGKTLA+ LP + + + DG + AL+
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALI 284
Query: 621 LAPTRELAQQIQQ 659
+ PTRELA Q+ +
Sbjct: 285 ITPTRELALQVTE 297
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 34.7 bits (76), Expect = 0.060
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +1
Query: 379 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
PI+ F++ D V +GV GYK+P+ IQ + + G++++A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIA 64
Score = 28.3 bits (60), Expect = 5.2
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Frame = +3
Query: 516 AKTGSGKT--LAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTS 686
A++G+GKT +A + IV+I+++ LVL+P+RELA Q ++ G HT+
Sbjct: 66 AQSGTGKTSMIAISVCQIVNISSRKVQ-------VLVLSPSRELASQTEKTIQAIGAHTN 118
Query: 687 YVRNTC 704
+ C
Sbjct: 119 IQAHAC 124
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 612 ALVLAPTRELAQQIQQVAADFG 677
ALVLAPTRELAQQI++V G
Sbjct: 110 ALVLAPTRELAQQIEKVMRALG 131
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 612 ALVLAPTRELAQQIQQVAADFG 677
ALVLAPTRELAQQI++V G
Sbjct: 112 ALVLAPTRELAQQIEKVMRALG 133
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 612 ALVLAPTRELAQQIQQVAADFG 677
ALVLAPTRELAQQI++V G
Sbjct: 110 ALVLAPTRELAQQIEKVMRALG 131
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 32.7 bits (71), Expect = 0.24
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI 653
TGSGKTLAY+LP + I R A+++AP+REL QI
Sbjct: 156 TGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
FEE PD + ++ G+ PT +Q+ P + G + V
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAV 151
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 31.9 bits (69), Expect = 0.43
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 516 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 653
AK+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 90 AKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 31.9 bits (69), Expect = 0.43
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 516 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 653
AK+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 7 AKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 31.9 bits (69), Expect = 0.43
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 516 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 653
AK+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 90 AKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Frame = +3
Query: 432 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINN----QPPIRRG 599
+D+G R + + K+ A+TGSGKT Y+ P I + N R
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNRE 155
Query: 600 DGP-----IALVLAPTRELAQQI 653
+ P I+L+L P L +Q+
Sbjct: 156 ERPFPLKNISLILCPNVMLCEQV 178
>At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / iron
superoxide dismutase, putative similar to Fe-superoxide
dismutase precursor [Medicago sativa]
gi|16974682|gb|AAL32441
Length = 305
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -2
Query: 411 RKICFFKVLNRIMNLIATYSYLVIISVLFDFIW*SFENCRMWIIKVFVERLEQTESQSGR 232
+K+ K N + L+ YS L+ I + FEN R I F+E+L E+ S R
Sbjct: 203 KKLVIVKTPNAVNPLVWDYSPLLTIDTWEHAYYLDFENRRAEYINTFMEKLVSWETVSTR 262
>At4g27850.1 68417.m03999 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 577
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -2
Query: 642 LTLW*APRPKQSDHHLSE*AVGCLCAQWLARCR-PTFCRNPFWLR 511
LTL+ K + HL L W+ +C FC NP W+R
Sbjct: 381 LTLFLIYLLKMTKTHLGAKKPSRLILSWITKCHFQMFCGNPMWIR 425
>At1g13560.2 68414.m01589 aminoalcoholphosphotransferase (AAPT1)
identical to aminoalcoholphosphotransferase GI:3661593
from [Arabidopsis thaliana]
Length = 346
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -2
Query: 486 YRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLIATYSYLVII 337
Y+ S NG LY + ++ + + L+ I NLIATY +LV++
Sbjct: 199 YKVVRSRNGSMVLALAMLYPFVVLLGGVLIWDYLSPI-NLIATYPHLVVL 247
>At1g13560.1 68414.m01590 aminoalcoholphosphotransferase (AAPT1)
identical to aminoalcoholphosphotransferase GI:3661593
from [Arabidopsis thaliana]
Length = 389
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -2
Query: 486 YRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLIATYSYLVII 337
Y+ S NG LY + ++ + + L+ I NLIATY +LV++
Sbjct: 242 YKVVRSRNGSMVLALAMLYPFVVLLGGVLIWDYLSPI-NLIATYPHLVVL 290
>At3g59750.1 68416.m06666 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 626
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -1
Query: 202 FPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAIIPVTRHDYFSDLVEDVYLNYG 23
+P KSS +K I V + + A FVAS + TRH +++E+ + YG
Sbjct: 235 YPKKSSDRTKKILAVCLTLAVFAVFVAS-------GICFVFYTRHKKVKEVLEEWEIQYG 287
>At3g19515.1 68416.m02473 expressed protein
Length = 507
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 319 EVEEYRNNHEVTVSGDEVHNPIQYFEEANFPDY 417
E E N E G+ HNP + EE +PD+
Sbjct: 387 ETESEEENPEDNQKGNPEHNPKEKSEEMQYPDF 419
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 652 ICCANSLVGAKTKAIGPSPLRI 587
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 28.3 bits (60), Expect = 5.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -3
Query: 149 EKNYRRICCLLQIWNHRFHGYY 84
E+ + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At3g54380.2 68416.m06010 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 383
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 438 NGLQRTDAHSSSRLADSYVWKEFSGVAKTGSG 533
N R + SSSR++++Y ++FS +TGSG
Sbjct: 2 NRRNRGSSSSSSRVSNTYGNRQFSDNPRTGSG 33
>At3g54380.1 68416.m06009 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 406
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 438 NGLQRTDAHSSSRLADSYVWKEFSGVAKTGSG 533
N R + SSSR++++Y ++FS +TGSG
Sbjct: 2 NRRNRGSSSSSSRVSNTYGNRQFSDNPRTGSG 33
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 612 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTC 704
AL+L+PTRELA Q ++ G H + + C
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHAC 137
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,714,512
Number of Sequences: 28952
Number of extensions: 316608
Number of successful extensions: 1128
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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