Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0864
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_27633| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_34942| Best HMM Match : Ca_channel_B (HMM E-Value=2.09999e-41)      29   3.1  
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_50363| Best HMM Match : PHO4 (HMM E-Value=0)                        28   7.2  
SB_29994| Best HMM Match : Ank (HMM E-Value=0)                         28   9.5  
SB_3977| Best HMM Match : EGF (HMM E-Value=1.8e-09)                    28   9.5  

>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +2

Query: 506 YLEIMFKTRKYCIINLYRFHSIRLHVSFNGEA--RRHENMRTTQNKTFLQRLR*KSRIYV 679
           Y     +TRKY    +Y     ++HV  + +A  RRH N +T ++     R + ++R Y 
Sbjct: 357 YARTRTQTRKY----MYTHPDTQMHVHVDRQANTRRHANAQTPRHANVRTRNKTRTRTYT 412

Query: 680 YP 685
           +P
Sbjct: 413 HP 414


>SB_27633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 118 SLSNTGATCNPYRYNNVLSRRGCVLWDHVPWICTL 222
           SL    A   P+RY  +L++  C +W    W+ +L
Sbjct: 110 SLDRCLAVTKPFRYQQLLTKTRCKIWIAAAWVFSL 144


>SB_34942| Best HMM Match : Ca_channel_B (HMM E-Value=2.09999e-41)
          Length = 536

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 21/73 (28%), Positives = 37/73 (50%)
 Frame = +3

Query: 333 LSRLFDYRCNSPESLSGVESSGRWENIVCRFYDHNIYFDLCLDSVARISSNNNIFVHNIW 512
           L +L   R  + +++ GV+  G  +   C   D    FDLCLD+ A  SS+ ++ +  ++
Sbjct: 202 LQKLIKLRGRNRKNM-GVQVVGTQKLTQCN--DLKEMFDLCLDNAALFSSSLSLQLKEMF 258

Query: 513 KLCSKPENIVSST 551
            LC     + SS+
Sbjct: 259 DLCLDNAALFSSS 271


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 509  DIVNKNVVITRNPSNTIQTKVKIYVM--IIKTAHDILPP 399
            D+ N  + + R    +++  VK+ ++    KT HDILPP
Sbjct: 3864 DVGNATLTVQRTGDTSVEHIVKVTIVDDSAKTGHDILPP 3902



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 509  DIVNKNVVITRNPSNTIQTKVKIYVM--IIKTAHDILPP 399
            D+ N  + + R    +++  VK+ ++    KT HD+LPP
Sbjct: 5098 DVGNATLTVQRTGDTSVEHIVKVTIVDDSAKTGHDVLPP 5136


>SB_50363| Best HMM Match : PHO4 (HMM E-Value=0)
          Length = 608

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 451 FVWIVLLGFLVITTFLFTISGNYVQN 528
           ++WIV+LGF++     F I  N V N
Sbjct: 9   YLWIVILGFILAFVLAFGIGANDVAN 34


>SB_29994| Best HMM Match : Ank (HMM E-Value=0)
          Length = 407

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 375 LSGVESSGRWENIVCRFYDHNIYFDLCLDSVARISSNNNIFVHNIWKLCSK 527
           L  ++  GR   +   FY H    ++ L++ A I SNNN   H + + C K
Sbjct: 119 LDVIDKYGRTPLMWAAFYGHKNMVEVFLEAGAMIKSNNN--WHALHEACKK 167


>SB_3977| Best HMM Match : EGF (HMM E-Value=1.8e-09)
          Length = 108

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +3

Query: 279 DDIHCGKCMHGSTRIYVTLSRLFDYRCNSPESLSGVESSG 398
           D  H   CM+G T I    + L +YRC  PE   G    G
Sbjct: 20  DKCHAMPCMNGGTCI----ATLNNYRCQCPEGYRGSNCEG 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,994,937
Number of Sequences: 59808
Number of extensions: 569774
Number of successful extensions: 1304
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)