Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0860
         (545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo...   122   2e-28
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi...   113   1e-25
At1g28470.1 68414.m03501 no apical meristem (NAM) family protein...    29   2.7  
At1g32960.1 68414.m04059 subtilase family protein contains simil...    28   4.7  
At1g32940.1 68414.m04057 subtilase family protein contains simil...    28   4.7  
At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase, p...    27   8.2  

>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
           ribosomal protein S23, Fragaria x ananassa, PIR:S56673
          Length = 142

 Score =  122 bits (293), Expect = 2e-28
 Identities = 55/80 (68%), Positives = 65/80 (81%)
 Frame = +3

Query: 21  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 200
           MGK RG+   RK    R  QRWADK++KK+H+G +WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 201 QPNSAIRKCVRVQLIKNGRK 260
           QPNSAIRKC RVQLIKNG+K
Sbjct: 60  QPNSAIRKCARVQLIKNGKK 79



 Score = 60.5 bits (140), Expect = 7e-10
 Identities = 27/42 (64%), Positives = 30/42 (71%)
 Frame = +1

Query: 322 VAGFGRKGHAVGDIPGVRFKXXXXXXXXXXXXYKEKKERPRS 447
           +AGFGRKGHAVGDIPGVRFK            +KEKKE+PRS
Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142



 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDE 316
           KK+ AFVP DGCLN+IEENDE
Sbjct: 78  KKIAAFVPNDGCLNYIEENDE 98


>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
           to 40S ribosomal protein S23 (S12) GB:P46297 from
           [Fragaria x ananassa]
          Length = 142

 Score =  113 bits (271), Expect = 1e-25
 Identities = 53/80 (66%), Positives = 62/80 (77%)
 Frame = +3

Query: 21  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 200
           MGK RG+   RK    R  QRWADK +KK++ G +WK  PF  +SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAK 59

Query: 201 QPNSAIRKCVRVQLIKNGRK 260
           QPNSAIRKC RVQLIKNG+K
Sbjct: 60  QPNSAIRKCARVQLIKNGKK 79



 Score = 60.5 bits (140), Expect = 7e-10
 Identities = 27/42 (64%), Positives = 30/42 (71%)
 Frame = +1

Query: 322 VAGFGRKGHAVGDIPGVRFKXXXXXXXXXXXXYKEKKERPRS 447
           +AGFGRKGHAVGDIPGVRFK            +KEKKE+PRS
Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142



 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDE 316
           KK+ AFVP DGCLN+IEENDE
Sbjct: 78  KKIAAFVPNDGCLNYIEENDE 98


>At1g28470.1 68414.m03501 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAM protein GI:6066594 from [Petunia hybrida]
          Length = 314

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -1

Query: 338 RPNPATSIRRF----LRCGLGNRHGGRMRSLSSVLNELYTDAFADGRVGLLSF 192
           +P    ++ RF    ++ G G  HGG+    + V+ EL      DG    LSF
Sbjct: 248 KPKNLVNLNRFSYENIQAGFGYEHGGKSEETTQVIRELVVRE-GDGSCSFLSF 299


>At1g32960.1 68414.m04059 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
          Length = 777

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 84  WADKEFKKAHMGTKWKANPFGGASHAKG 167
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602


>At1g32940.1 68414.m04057 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 774

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 84  WADKEFKKAHMGTKWKANPFGGASHAKG 167
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599


>At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase,
           putative similar to dihydrolipoamide acetyltransferase
           (E2) subunit of PDC [Arabidopsis thaliana] GI:559395;
           contains Pfam profiles PF00198: 2-oxo acid
           dehydrogenases acyltransferase (catalytic domain),
           PF00364: Biotin-requiring enzyme, PF02817: e3 binding
           domain; supporting cDNA
           gi|5881964|gb|AF066080.1|AF066080
          Length = 637

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 129 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK*PH 269
           K  P   +S +K  V +        PNS IRK +  +L+++ +K PH
Sbjct: 386 KETPSKSSSTSKPSVTQSDNNYEDFPNSQIRKIIAKRLLESKQKIPH 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,135,205
Number of Sequences: 28952
Number of extensions: 246027
Number of successful extensions: 523
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)