Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0859
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23935.1 68414.m03020 apoptosis inhibitory protein 5 (API5)-r...    29   2.4  
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea...    28   5.7  
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea...    28   5.7  

>At1g23935.1 68414.m03020 apoptosis inhibitory protein 5
           (API5)-related contains weak hit to Pfam profile
           PF05918: Apoptosis inhibitory protein 5 (API5)
          Length = 660

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 172 VFIDRPINFKNCYKTTFYSKL--VENKGIPN*YRYSTIEFLCSDFHDFSLD 26
           + +DR     +CY  T    L  V++ GIP   R     FLC+D+H  S D
Sbjct: 410 ILVDRHGRVHHCYGGTIEKALCHVQSHGIP---RDVVTNFLCTDYHPPSAD 457


>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to cell cycle control protein cwf8 (SP:O14011)
           [Schizosaccharomyces pombe (Fission yeast)]
          Length = 537

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 441 TGDAIPTPETVPLRKTSIIQPK*LHQVRHPSLV 539
           TG+ +   + VP++   II+PK LH    P L+
Sbjct: 41  TGEPLTIDDIVPIKTGEIIKPKTLHTASIPGLL 73


>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to cell cycle control protein cwf8 (SP:O14011)
           [Schizosaccharomyces pombe (Fission yeast)]
          Length = 565

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 441 TGDAIPTPETVPLRKTSIIQPK*LHQVRHPSLV 539
           TG+ +   + VP++   II+PK LH    P L+
Sbjct: 41  TGEPLTIDDIVPIKTGEIIKPKTLHTASIPGLL 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,539,183
Number of Sequences: 28952
Number of extensions: 240316
Number of successful extensions: 397
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)