Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0858
         (749 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   4.6  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   4.6  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   4.6  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 458 ACTQDPTQPEDRNCLHSLAGRH 523
           AC   P QPE     +SL G H
Sbjct: 172 ACMGPPPQPEPPVTFNSLNGAH 193


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 264 CGTFGFGETHHSVAQIIVPGFFRRFFLSHRTCRCGSR 154
           CG F  G+ ++  A     GFF+R    +R   C ++
Sbjct: 41  CGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAK 77


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 264 CGTFGFGETHHSVAQIIVPGFFRRFFLSHRTCRCGSR 154
           CG F  G+ ++  A     GFF+R    +R   C ++
Sbjct: 41  CGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAK 77


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,794
Number of Sequences: 336
Number of extensions: 4036
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)