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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0858
         (749 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    77   9e-15
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    77   9e-15
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    76   2e-14
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   1.9  
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea...    29   4.4  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 39/65 (60%), Positives = 45/65 (69%)
 Frame = +2

Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 688
           LAGR  GKRVV +  L SGLLLVTGPF  N  PLRR+ Q YVIGTST++ +    L K F
Sbjct: 98  LAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-F 156

Query: 689 NDDYF 703
           +D YF
Sbjct: 157 DDKYF 161


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 39/65 (60%), Positives = 45/65 (69%)
 Frame = +2

Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 688
           LAGR  GKRVV +  L SGLLLVTGPF  N  PLRR+ Q YVIGTST++ +    L K F
Sbjct: 98  LAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-F 156

Query: 689 NDDYF 703
           +D YF
Sbjct: 157 DDKYF 161


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 39/65 (60%), Positives = 44/65 (67%)
 Frame = +2

Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 688
           LAGR  GKRVV +  L SGLLLVTGPF  N  PLRR+ Q YVIGTST+I +      K F
Sbjct: 98  LAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEK-F 156

Query: 689 NDDYF 703
           +D YF
Sbjct: 157 DDKYF 161


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 381 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 470
           P++RR+S  P +E++  S GGR  S  H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555


>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to Rbap46 polypeptide (GI:9454362) [Gallus
           gallus]
          Length = 351

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 347 WR*EEWGNQNSTPQT*EV--LLPHSGENPCLIWWPS 448
           W+  E   Q ++PQ   V  L  H G+  C++WWPS
Sbjct: 96  WQIPELYGQLNSPQLERVASLDAHVGKINCVLWWPS 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,820,091
Number of Sequences: 28952
Number of extensions: 332314
Number of successful extensions: 732
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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