Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0857
         (720 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   0.47 
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    25   0.82 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   2.5  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   3.3  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.4  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.4  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    22   5.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   5.8  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   7.6  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 673 CWGPRVDLSSRRGVPELVPCLPTTPHPQ 590
           C    V+   RR  P  + CL TTP P+
Sbjct: 14  CTYGNVNYRQRRSQPLKISCLKTTPPPE 41


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 352 SFSLREDESRNDDANTARVQSRVRGGRHSLDEVRQ 456
           S++L   E+ +   N   +   V GGRH L+ + Q
Sbjct: 149 SYALTVAETADGRLNATIIADNVFGGRHGLETLNQ 183


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 498 KNPFSELMARSTPSLSNFIQAMSSPTHSTLYPG 400
           +NP  E    S  ++ + + A+S  T+STL PG
Sbjct: 31  ENPPPEDTPLSFKNIESHLNAISQITNSTLDPG 63


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 615 HGTSSGTPRRLERSTLGPQQEN 680
           HGT++GT + + R +   Q +N
Sbjct: 112 HGTNNGTNKNMRRLSTTTQNKN 133


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 590 GVSATLVNTVFLNTVAIAIGFVAADVPV 507
           GV+  L  TVFLN VA  I   +  VP+
Sbjct: 246 GVTILLSLTVFLNLVAEKIPTTSDAVPL 273


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 590 GVSATLVNTVFLNTVAIAIGFVAADVPV 507
           GV+  L  TVFLN VA  I   +  VP+
Sbjct: 246 GVTILLSLTVFLNLVAEKIPTTSDAVPL 273


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 438 AMSSPTHSTLYPGSVG 391
           A++ PT+++LY G+ G
Sbjct: 269 ALADPTNTSLYAGTYG 284


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 613 LPTTPHPQVFPPR 575
           LP  PHP   PPR
Sbjct: 735 LPPPPHPHHQPPR 747


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 613 LPTTPHPQVFPPR 575
           LP  PHP   PPR
Sbjct: 627 LPPPPHPHHQPPR 639


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
 Frame = -2

Query: 617 MPSHHTPPSGVSATLVNTVFLNTVAIAI-------GFVAADVPVQFQR 495
           +P HH P     +    T+FL   A  I       G  A+D+ V F+R
Sbjct: 125 LPPHHAPEEKKRSFWAVTIFLVLAASVIFFDVVVWGLSASDLGVFFKR 172


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,674
Number of Sequences: 336
Number of extensions: 4502
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)