SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0857
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)                      158   5e-39
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)                      151   7e-37
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)                       151   7e-37
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_25350| Best HMM Match : Collagen (HMM E-Value=0)                    30   2.2  
SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)         29   3.8  
SB_29511| Best HMM Match : CHGN (HMM E-Value=0.00037)                  29   5.0  
SB_10900| Best HMM Match : I-set (HMM E-Value=0)                       28   6.6  
SB_55205| Best HMM Match : DUF1270 (HMM E-Value=3.7)                   28   6.6  
SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 549

 Score =  158 bits (383), Expect = 5e-39
 Identities = 70/96 (72%), Positives = 82/96 (85%)
 Frame = +2

Query: 221 VGQEVLRSTSGTVIARREGWLAEHMLIVGITNPQGKKRYIAAAFPSACGKTNLAMMTPTL 400
           +G++       +VIAR EGWLAEHM+I+G+TNP+GKK YIAAAFPSACGKTNLAM+TPT+
Sbjct: 102 LGKKCFALRIASVIARDEGWLAEHMMILGLTNPEGKKIYIAAAFPSACGKTNLAMLTPTI 161

Query: 401 PGYKVECVGDDIAWMKFDKDGVLRAINSENGFFGIA 508
           PG+K ECVGDDIAWM FDKDG LRAIN E GFFG+A
Sbjct: 162 PGWKCECVGDDIAWMWFDKDGTLRAINPECGFFGVA 197



 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 8/78 (10%)
 Frame = +1

Query: 511 GTSAATNPIAMATVFKNTVFTNVAETPEGGVWWEGMGPAPE--RLVDWKGQP-WDP---- 669
           GTS  +NPIAM+T  K+T+FTNVA+T +G  WWEG+ P  +  ++  W G P W P    
Sbjct: 199 GTSFLSNPIAMSTFQKDTIFTNVAKTSDGDFWWEGLNPPADGIKIRSWLGDPDWKPEVAG 258

Query: 670 -SKKTPAAHPNSRFCTPA 720
            ++KT AAHPNSRFC P+
Sbjct: 259 KTRKT-AAHPNSRFCAPS 275



 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 44/101 (43%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
 Frame = +3

Query: 3   SPYVVFSMRVMTRIGAKVLDILRQDEQFVHCLHAVGSGGTPG-----WPCDPQNIVVLHK 167
           S YVV  MR+MTR+G+ VL  L  D  FV CLH+VG     G     WPCDP+  ++ H 
Sbjct: 25  SEYVVCCMRIMTRMGSHVLKALG-DGDFVRCLHSVGGPLHDGKNNVPWPCDPERTLITHF 83

Query: 168 PANNEIVXXXXXXXXXXXXXKKCFALRLGQ*SPVAKD-GWL 287
           P   EI              KKCFALR+   S +A+D GWL
Sbjct: 84  PETREIKSYGSGYGGNSLLGKKCFALRIA--SVIARDEGWL 122


>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 613

 Score =  151 bits (365), Expect = 7e-37
 Identities = 65/82 (79%), Positives = 74/82 (90%)
 Frame = +2

Query: 260 IARREGWLAEHMLIVGITNPQGKKRYIAAAFPSACGKTNLAMMTPTLPGYKVECVGDDIA 439
           IA  EGWLAEHM+I+G+TNP+GKK YIAAAFPSACGKTNLAM+TPT+PG+K ECVGDDI 
Sbjct: 245 IAHDEGWLAEHMMIMGLTNPEGKKIYIAAAFPSACGKTNLAMLTPTIPGWKCECVGDDIN 304

Query: 440 WMKFDKDGVLRAINSENGFFGI 505
           WM FDKDG LRAIN E+GFFG+
Sbjct: 305 WMWFDKDGTLRAINPESGFFGV 326



 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
 Frame = +1

Query: 505 CTGTSAATNPIAMATVFKNTVFTNVAETPEGGVWWEGMGPAPERLVDWKGQP-WDPSKKT 681
           C GT+  +NPIAM T  K+T+FTNVA T +G  WWE       ++  WKG P W P++  
Sbjct: 327 CPGTTFTSNPIAMKTFQKDTIFTNVAVTSDGDFWWE----EGIKIRSWKGDPDWKPTENG 382

Query: 682 P-AAHPNSRFCTPA 720
           P AAHPNSRFC P+
Sbjct: 383 PTAAHPNSRFCAPS 396



 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 43/101 (42%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
 Frame = +3

Query: 3   SPYVVFSMRVMTRIGAKVLDILRQDEQFVHCLHAVGSGGTPG-----WPCDPQNIVVLHK 167
           S YVV  MR+MTR+G+ VL  L  D  FV  +H+VG     G     WPCDP+  ++ H 
Sbjct: 155 SEYVVCCMRIMTRMGSHVLKALG-DGDFVRGVHSVGFPLKEGVKEVPWPCDPERTLITHF 213

Query: 168 PANNEIVXXXXXXXXXXXXXKKCFALRLGQ*SPVAKD-GWL 287
           PA  EI              KKCFALR+   S +A D GWL
Sbjct: 214 PATREIKSYGSGYGGNSLLGKKCFALRIA--SNIAHDEGWL 252


>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 707

 Score =  151 bits (365), Expect = 7e-37
 Identities = 65/83 (78%), Positives = 76/83 (91%)
 Frame = +2

Query: 260 IARREGWLAEHMLIVGITNPQGKKRYIAAAFPSACGKTNLAMMTPTLPGYKVECVGDDIA 439
           IA +EGWLAEHMLI+ +TNP+GKK+YIAAAFPSACGKTNLAM+ PT+PG+KV+CVGDDIA
Sbjct: 429 IALKEGWLAEHMLIMALTNPEGKKKYIAAAFPSACGKTNLAMLKPTIPGWKVDCVGDDIA 488

Query: 440 WMKFDKDGVLRAINSENGFFGIA 508
           WM FDK G LRAIN E+GFFG+A
Sbjct: 489 WMWFDKTGQLRAINPESGFFGVA 511



 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
 Frame = +1

Query: 511 GTSAATNPIAMATVFKNTVFTNVAETPEGGVWWEGMGPAPE--RLVDWKGQP-WDPSKKT 681
           GTS  TNP A+ T  K+T+FTN A T +G  WWEG+   P+   +  W G+  W P   +
Sbjct: 513 GTSMKTNPEALKTCLKDTIFTNTAMTSDGDFWWEGLPDPPKGVSITSWLGEENWSPESGS 572

Query: 682 PAAHPNSRFCTPA 720
            AAHPNSRFCTP+
Sbjct: 573 KAAHPNSRFCTPS 585



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 43/100 (43%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
 Frame = +3

Query: 3   SPYVVFSMRVMTRIGAKVLDILRQDEQFVHCLHAVGSGGTPG-----WPCDPQNIVVLHK 167
           S YVV  MR+MTR+G+ VL  L Q + FV CLH+VG     G     WPCDP   ++ H 
Sbjct: 339 SEYVVCCMRIMTRMGSHVLKALDQGD-FVKCLHSVGKPLKEGEKDVLWPCDPDRTIITHF 397

Query: 168 PANNEIVXXXXXXXXXXXXXKKCFALRLGQ*SPVAKDGWL 287
           PA+N I              KKCFALR+   +   K+GWL
Sbjct: 398 PADNYIKSFGSGYGGNSLLGKKCFALRIAS-NIALKEGWL 436


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 19/76 (25%), Positives = 31/76 (40%)
 Frame = -1

Query: 303  TISICSASHPSRRAITVPDVERSTSCPTNCCRHIHCRSLLSRC*PACGVRRCSEGRRASP 124
            ++S C    P+R   T P      +C  + CR        S C P C  + C  G    P
Sbjct: 1648 SVSSCKPDCPARCCTTEPLSACPATCSPDSCRPECPLICCSVCPPNCSAQSC--GNFCPP 1705

Query: 123  ECHRIRLREDNEQTAR 76
            +C   +L +D ++  +
Sbjct: 1706 KCCTSQLSKDRQKECK 1721


>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1112

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = -1

Query: 609  PPHPTLRCFRHVSEHGVFEHRRHCYRIRSG*RTCAIPKNPFSELM---ARSTPSLSNFIQ 439
            PP  T     H   HG +  RRH +             + + +L+   + STPS S+ + 
Sbjct: 916  PPVSTFYHHHHHQHHGHYRRRRHYHHPYYPYYHQPYHHHQYHQLLISSSLSTPSTSSSLL 975

Query: 438  AMSSPTHSTLYPGSV 394
            A +SPT + L  G+V
Sbjct: 976  ASTSPTINYLSVGTV 990


>SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
          Length = 888

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 610 EGMGPAPERLVDWKGQPWDPSKKTPAAHPN 699
           + +GP P    DW  + WD  K   A H N
Sbjct: 35  DSLGPWPSLTDDWDEESWDLEKAVAAMHRN 64


>SB_29511| Best HMM Match : CHGN (HMM E-Value=0.00037)
          Length = 955

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
 Frame = +2

Query: 149 HRRTPQAG*QRDSKLRQWIWRQQFVGQ---EVLRSTSG-TVIARREGWLAEHMLIVGITN 316
           H R P     + SK + + W+++  GQ    V ++  G TV   R  W       + +T 
Sbjct: 128 HSRDPDISHTKISKWKPYQWKREMRGQLNVHVWQAWCGSTVHDLRRNWFYPLYPDLRLT- 186

Query: 317 PQGKKRYIAAAFPSACGKTNLAMMTPTLPGYKVECVGDDIA---WMKFDKD 460
               KR++   F +  G+     + P L G  V  +  D +   W+  D+D
Sbjct: 187 ---VKRFVVQHFENDYGQRVFGFLHPPLTGQYVFALSSDDSSELWLSVDED 234


>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1642

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
 Frame = +2

Query: 395 TLPGYKVECVGDDIAWMKFDKDGVLRAINSE-----NGFFGIAQVRQPLRIR*QWRRCSK 559
           TLP          I W K D+ G L+ + S      NG    A V +  R     + C+ 
Sbjct: 585 TLPCRATAADAPVITWFKADQSGALQQLTSSGVSQANGDLSFASVTRQDRGMYACQACNA 644

Query: 560 TPCSLTWRKHLRV 598
             C++T R  L V
Sbjct: 645 AGCTMTPRASLNV 657


>SB_55205| Best HMM Match : DUF1270 (HMM E-Value=3.7)
          Length = 600

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
 Frame = +2

Query: 182 DSKLRQWIWRQQFVGQEVLRSTSGTVIARREGWLAEHMLIVGITNPQGKKRYIAAAFPSA 361
           D  L QWI R   +  +    + G  IAR    L +  L   I  P  +       F SA
Sbjct: 293 DGSLGQWIARPMNIWVD---GSLGQWIARPMNILVDGSLGRWIAGPMDRSGRRGRVFRSA 349

Query: 362 CGKTNLAMMTPTLPGYKVEC--VGDDIAW 442
           C     A + PT  G   E   V D I W
Sbjct: 350 CVAKMAASVDPTALGNSAEAFLVPDVILW 378


>SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1880

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
 Frame = +2

Query: 182 DSKLRQWIWRQQFVGQEVLRSTSGTVIARREGWLAEHMLIVGITNPQGKKRYIAAAFPSA 361
           D  L QWI R   +  +    + G  IAR    L +  L   I  P  +       F SA
Sbjct: 293 DGSLGQWIARPMNIWVD---GSLGQWIARPMNILVDGSLGRWIAGPMDRSGRRGRVFRSA 349

Query: 362 CGKTNLAMMTPTLPGYKVEC--VGDDIAW 442
           C     A + PT  G   E   V D I W
Sbjct: 350 CVAKMAASVDPTALGNSAEAFLVPDVILW 378


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,369,341
Number of Sequences: 59808
Number of extensions: 628540
Number of successful extensions: 2497
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2488
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -