BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0857 (720 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_37396| Best HMM Match : PEPCK (HMM E-Value=0) 158 5e-39 SB_37397| Best HMM Match : PEPCK (HMM E-Value=0) 151 7e-37 SB_3810| Best HMM Match : PEPCK (HMM E-Value=0) 151 7e-37 SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71 SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 30 2.2 SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 29 3.8 SB_29511| Best HMM Match : CHGN (HMM E-Value=0.00037) 29 5.0 SB_10900| Best HMM Match : I-set (HMM E-Value=0) 28 6.6 SB_55205| Best HMM Match : DUF1270 (HMM E-Value=3.7) 28 6.6 SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6 >SB_37396| Best HMM Match : PEPCK (HMM E-Value=0) Length = 549 Score = 158 bits (383), Expect = 5e-39 Identities = 70/96 (72%), Positives = 82/96 (85%) Frame = +2 Query: 221 VGQEVLRSTSGTVIARREGWLAEHMLIVGITNPQGKKRYIAAAFPSACGKTNLAMMTPTL 400 +G++ +VIAR EGWLAEHM+I+G+TNP+GKK YIAAAFPSACGKTNLAM+TPT+ Sbjct: 102 LGKKCFALRIASVIARDEGWLAEHMMILGLTNPEGKKIYIAAAFPSACGKTNLAMLTPTI 161 Query: 401 PGYKVECVGDDIAWMKFDKDGVLRAINSENGFFGIA 508 PG+K ECVGDDIAWM FDKDG LRAIN E GFFG+A Sbjct: 162 PGWKCECVGDDIAWMWFDKDGTLRAINPECGFFGVA 197 Score = 81.8 bits (193), Expect = 5e-16 Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 8/78 (10%) Frame = +1 Query: 511 GTSAATNPIAMATVFKNTVFTNVAETPEGGVWWEGMGPAPE--RLVDWKGQP-WDP---- 669 GTS +NPIAM+T K+T+FTNVA+T +G WWEG+ P + ++ W G P W P Sbjct: 199 GTSFLSNPIAMSTFQKDTIFTNVAKTSDGDFWWEGLNPPADGIKIRSWLGDPDWKPEVAG 258 Query: 670 -SKKTPAAHPNSRFCTPA 720 ++KT AAHPNSRFC P+ Sbjct: 259 KTRKT-AAHPNSRFCAPS 275 Score = 74.1 bits (174), Expect = 1e-13 Identities = 44/101 (43%), Positives = 54/101 (53%), Gaps = 6/101 (5%) Frame = +3 Query: 3 SPYVVFSMRVMTRIGAKVLDILRQDEQFVHCLHAVGSGGTPG-----WPCDPQNIVVLHK 167 S YVV MR+MTR+G+ VL L D FV CLH+VG G WPCDP+ ++ H Sbjct: 25 SEYVVCCMRIMTRMGSHVLKALG-DGDFVRCLHSVGGPLHDGKNNVPWPCDPERTLITHF 83 Query: 168 PANNEIVXXXXXXXXXXXXXKKCFALRLGQ*SPVAKD-GWL 287 P EI KKCFALR+ S +A+D GWL Sbjct: 84 PETREIKSYGSGYGGNSLLGKKCFALRIA--SVIARDEGWL 122 >SB_37397| Best HMM Match : PEPCK (HMM E-Value=0) Length = 613 Score = 151 bits (365), Expect = 7e-37 Identities = 65/82 (79%), Positives = 74/82 (90%) Frame = +2 Query: 260 IARREGWLAEHMLIVGITNPQGKKRYIAAAFPSACGKTNLAMMTPTLPGYKVECVGDDIA 439 IA EGWLAEHM+I+G+TNP+GKK YIAAAFPSACGKTNLAM+TPT+PG+K ECVGDDI Sbjct: 245 IAHDEGWLAEHMMIMGLTNPEGKKIYIAAAFPSACGKTNLAMLTPTIPGWKCECVGDDIN 304 Query: 440 WMKFDKDGVLRAINSENGFFGI 505 WM FDKDG LRAIN E+GFFG+ Sbjct: 305 WMWFDKDGTLRAINPESGFFGV 326 Score = 80.2 bits (189), Expect = 2e-15 Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Frame = +1 Query: 505 CTGTSAATNPIAMATVFKNTVFTNVAETPEGGVWWEGMGPAPERLVDWKGQP-WDPSKKT 681 C GT+ +NPIAM T K+T+FTNVA T +G WWE ++ WKG P W P++ Sbjct: 327 CPGTTFTSNPIAMKTFQKDTIFTNVAVTSDGDFWWE----EGIKIRSWKGDPDWKPTENG 382 Query: 682 P-AAHPNSRFCTPA 720 P AAHPNSRFC P+ Sbjct: 383 PTAAHPNSRFCAPS 396 Score = 68.5 bits (160), Expect = 5e-12 Identities = 43/101 (42%), Positives = 53/101 (52%), Gaps = 6/101 (5%) Frame = +3 Query: 3 SPYVVFSMRVMTRIGAKVLDILRQDEQFVHCLHAVGSGGTPG-----WPCDPQNIVVLHK 167 S YVV MR+MTR+G+ VL L D FV +H+VG G WPCDP+ ++ H Sbjct: 155 SEYVVCCMRIMTRMGSHVLKALG-DGDFVRGVHSVGFPLKEGVKEVPWPCDPERTLITHF 213 Query: 168 PANNEIVXXXXXXXXXXXXXKKCFALRLGQ*SPVAKD-GWL 287 PA EI KKCFALR+ S +A D GWL Sbjct: 214 PATREIKSYGSGYGGNSLLGKKCFALRIA--SNIAHDEGWL 252 >SB_3810| Best HMM Match : PEPCK (HMM E-Value=0) Length = 707 Score = 151 bits (365), Expect = 7e-37 Identities = 65/83 (78%), Positives = 76/83 (91%) Frame = +2 Query: 260 IARREGWLAEHMLIVGITNPQGKKRYIAAAFPSACGKTNLAMMTPTLPGYKVECVGDDIA 439 IA +EGWLAEHMLI+ +TNP+GKK+YIAAAFPSACGKTNLAM+ PT+PG+KV+CVGDDIA Sbjct: 429 IALKEGWLAEHMLIMALTNPEGKKKYIAAAFPSACGKTNLAMLKPTIPGWKVDCVGDDIA 488 Query: 440 WMKFDKDGVLRAINSENGFFGIA 508 WM FDK G LRAIN E+GFFG+A Sbjct: 489 WMWFDKTGQLRAINPESGFFGVA 511 Score = 82.2 bits (194), Expect = 4e-16 Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 3/73 (4%) Frame = +1 Query: 511 GTSAATNPIAMATVFKNTVFTNVAETPEGGVWWEGMGPAPE--RLVDWKGQP-WDPSKKT 681 GTS TNP A+ T K+T+FTN A T +G WWEG+ P+ + W G+ W P + Sbjct: 513 GTSMKTNPEALKTCLKDTIFTNTAMTSDGDFWWEGLPDPPKGVSITSWLGEENWSPESGS 572 Query: 682 PAAHPNSRFCTPA 720 AAHPNSRFCTP+ Sbjct: 573 KAAHPNSRFCTPS 585 Score = 77.0 bits (181), Expect = 1e-14 Identities = 43/100 (43%), Positives = 54/100 (54%), Gaps = 5/100 (5%) Frame = +3 Query: 3 SPYVVFSMRVMTRIGAKVLDILRQDEQFVHCLHAVGSGGTPG-----WPCDPQNIVVLHK 167 S YVV MR+MTR+G+ VL L Q + FV CLH+VG G WPCDP ++ H Sbjct: 339 SEYVVCCMRIMTRMGSHVLKALDQGD-FVKCLHSVGKPLKEGEKDVLWPCDPDRTIITHF 397 Query: 168 PANNEIVXXXXXXXXXXXXXKKCFALRLGQ*SPVAKDGWL 287 PA+N I KKCFALR+ + K+GWL Sbjct: 398 PADNYIKSFGSGYGGNSLLGKKCFALRIAS-NIALKEGWL 436 >SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2870 Score = 31.5 bits (68), Expect = 0.71 Identities = 19/76 (25%), Positives = 31/76 (40%) Frame = -1 Query: 303 TISICSASHPSRRAITVPDVERSTSCPTNCCRHIHCRSLLSRC*PACGVRRCSEGRRASP 124 ++S C P+R T P +C + CR S C P C + C G P Sbjct: 1648 SVSSCKPDCPARCCTTEPLSACPATCSPDSCRPECPLICCSVCPPNCSAQSC--GNFCPP 1705 Query: 123 ECHRIRLREDNEQTAR 76 +C +L +D ++ + Sbjct: 1706 KCCTSQLSKDRQKECK 1721 >SB_25350| Best HMM Match : Collagen (HMM E-Value=0) Length = 1112 Score = 29.9 bits (64), Expect = 2.2 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%) Frame = -1 Query: 609 PPHPTLRCFRHVSEHGVFEHRRHCYRIRSG*RTCAIPKNPFSELM---ARSTPSLSNFIQ 439 PP T H HG + RRH + + + +L+ + STPS S+ + Sbjct: 916 PPVSTFYHHHHHQHHGHYRRRRHYHHPYYPYYHQPYHHHQYHQLLISSSLSTPSTSSSLL 975 Query: 438 AMSSPTHSTLYPGSV 394 A +SPT + L G+V Sbjct: 976 ASTSPTINYLSVGTV 990 >SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) Length = 888 Score = 29.1 bits (62), Expect = 3.8 Identities = 11/30 (36%), Positives = 14/30 (46%) Frame = +1 Query: 610 EGMGPAPERLVDWKGQPWDPSKKTPAAHPN 699 + +GP P DW + WD K A H N Sbjct: 35 DSLGPWPSLTDDWDEESWDLEKAVAAMHRN 64 >SB_29511| Best HMM Match : CHGN (HMM E-Value=0.00037) Length = 955 Score = 28.7 bits (61), Expect = 5.0 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 7/111 (6%) Frame = +2 Query: 149 HRRTPQAG*QRDSKLRQWIWRQQFVGQ---EVLRSTSG-TVIARREGWLAEHMLIVGITN 316 H R P + SK + + W+++ GQ V ++ G TV R W + +T Sbjct: 128 HSRDPDISHTKISKWKPYQWKREMRGQLNVHVWQAWCGSTVHDLRRNWFYPLYPDLRLT- 186 Query: 317 PQGKKRYIAAAFPSACGKTNLAMMTPTLPGYKVECVGDDIA---WMKFDKD 460 KR++ F + G+ + P L G V + D + W+ D+D Sbjct: 187 ---VKRFVVQHFENDYGQRVFGFLHPPLTGQYVFALSSDDSSELWLSVDED 234 >SB_10900| Best HMM Match : I-set (HMM E-Value=0) Length = 1642 Score = 28.3 bits (60), Expect = 6.6 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 5/73 (6%) Frame = +2 Query: 395 TLPGYKVECVGDDIAWMKFDKDGVLRAINSE-----NGFFGIAQVRQPLRIR*QWRRCSK 559 TLP I W K D+ G L+ + S NG A V + R + C+ Sbjct: 585 TLPCRATAADAPVITWFKADQSGALQQLTSSGVSQANGDLSFASVTRQDRGMYACQACNA 644 Query: 560 TPCSLTWRKHLRV 598 C++T R L V Sbjct: 645 AGCTMTPRASLNV 657 >SB_55205| Best HMM Match : DUF1270 (HMM E-Value=3.7) Length = 600 Score = 28.3 bits (60), Expect = 6.6 Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 2/89 (2%) Frame = +2 Query: 182 DSKLRQWIWRQQFVGQEVLRSTSGTVIARREGWLAEHMLIVGITNPQGKKRYIAAAFPSA 361 D L QWI R + + + G IAR L + L I P + F SA Sbjct: 293 DGSLGQWIARPMNIWVD---GSLGQWIARPMNILVDGSLGRWIAGPMDRSGRRGRVFRSA 349 Query: 362 CGKTNLAMMTPTLPGYKVEC--VGDDIAW 442 C A + PT G E V D I W Sbjct: 350 CVAKMAASVDPTALGNSAEAFLVPDVILW 378 >SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1880 Score = 28.3 bits (60), Expect = 6.6 Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 2/89 (2%) Frame = +2 Query: 182 DSKLRQWIWRQQFVGQEVLRSTSGTVIARREGWLAEHMLIVGITNPQGKKRYIAAAFPSA 361 D L QWI R + + + G IAR L + L I P + F SA Sbjct: 293 DGSLGQWIARPMNIWVD---GSLGQWIARPMNILVDGSLGRWIAGPMDRSGRRGRVFRSA 349 Query: 362 CGKTNLAMMTPTLPGYKVEC--VGDDIAW 442 C A + PT G E V D I W Sbjct: 350 CVAKMAASVDPTALGNSAEAFLVPDVILW 378 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 26,369,341 Number of Sequences: 59808 Number of extensions: 628540 Number of successful extensions: 2497 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 2300 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2488 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1913853903 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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