Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0857
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04130.1 68417.m00583 Ulp1 protease family protein contains P...    33   0.25 
At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger) fa...    30   1.3  
At3g42060.1 68416.m04315 myosin heavy chain-related                    30   1.8  
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea...    29   3.1  
At4g05210.1 68417.m00785 bacterial transferase hexapeptide repea...    28   7.2  
At2g38610.2 68415.m04743 KH domain-containing protein                  27   9.5  
At2g38610.1 68415.m04742 KH domain-containing protein                  27   9.5  
At1g48490.1 68414.m05420 protein kinase, putative similar to inc...    27   9.5  

>At4g04130.1 68417.m00583 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At2g11345,  At3g42690
          Length = 1200

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 697 LDVQPEFSCWGPRVDLSSRRGVPELVPCLPTTPHPQVFP 581
           +D +P  +   P +DL +R G P   PC P TP  QV P
Sbjct: 665 MDTKPIKTMEEP-LDLGNRAGSPRQTPCSPVTPIAQVIP 702


>At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 506

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -2

Query: 230 LAQQTVAAISTAVAYYLVVSRLVEYDDVLRVAGPARSATGSDCVKTMNKLLVL 72
           L ++TVA      +  LV    +E DDVL++A    +A   D + T+ K LV+
Sbjct: 175 LQERTVALAKELASLKLVSDLSLEEDDVLKLALLGNNAKTKDTIDTLVKSLVI 227


>At3g42060.1 68416.m04315 myosin heavy chain-related
          Length = 712

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 468 CGPSTLKTGSLELHRYVSRYESD 536
           C PS L+ GS EL RY  +++ D
Sbjct: 364 CSPSCLRMGSCELPRYTDQFDDD 386


>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
            family protein contains 5 WD-40 repeats (PF00400);
            similar to WDR protein, form B (GI:14970593) [Mus
            musculus]
          Length = 1589

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 586  TPEGGVWWEG-MGPAPERLVDWKGQPWD 666
            T EGG WWEG +  +  +  D+   PW+
Sbjct: 1423 TGEGGAWWEGRIESSQVKSTDFPESPWE 1450


>At4g05210.1 68417.m00785 bacterial transferase hexapeptide
           repeat-containing protein similar to SP|P32203
           UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase (EC 2.3.1.-) {Yersinia
           enterocolitica}; contains Pfam profile PF00132:
           Bacterial transferase hexapeptide (three repeats)
          Length = 299

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 597 TLRCFRHVSEHGVFEHRRHCYRIR 526
           +LR    VS HGVF ++R  YR+R
Sbjct: 4   SLRTLFSVSTHGVFLNKRSSYRVR 27


>At2g38610.2 68415.m04743 KH domain-containing protein
          Length = 286

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +1

Query: 559 NTVFTNVAETPEGGVWWEGMGP-----APERLVDWKGQPWDPSKKT 681
           + + +NV+ T  GG  W G+        P   +DW+G P  PS  T
Sbjct: 90  SNLMSNVSNTGLGG--WNGLSQERLSGTPGMTMDWQGAPGSPSSYT 133


>At2g38610.1 68415.m04742 KH domain-containing protein
          Length = 286

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +1

Query: 559 NTVFTNVAETPEGGVWWEGMGP-----APERLVDWKGQPWDPSKKT 681
           + + +NV+ T  GG  W G+        P   +DW+G P  PS  T
Sbjct: 90  SNLMSNVSNTGLGG--WNGLSQERLSGTPGMTMDWQGAPGSPSSYT 133


>At1g48490.1 68414.m05420 protein kinase, putative similar to
           incomplete root hair elongation (IRE) [Arabidopsis
           thaliana] gi|6729346|dbj|BAA89783
          Length = 878

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 715 GCRIWNLDVQPEFSCWGPRVDLSSRRGVPELVPCLPTT 602
           G +I N  +  E     P++   SRRG  +++ C P T
Sbjct: 259 GMKISNASLTEELDVLSPKLSDWSRRGSEDMLDCFPET 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,929,306
Number of Sequences: 28952
Number of extensions: 414796
Number of successful extensions: 1204
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)