Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0856
         (593 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2G110 Cluster: Putative uncharacterized protein; n=5; ...    35   1.7  
UniRef50_Q623B6 Cluster: Putative uncharacterized protein CBG019...    33   3.8  
UniRef50_Q1VV72 Cluster: Lipid A biosynthesis-like protein; n=3;...    33   5.0  
UniRef50_Q4PHP8 Cluster: Predicted protein; n=1; Ustilago maydis...    33   5.0  

>UniRef50_A2G110 Cluster: Putative uncharacterized protein; n=5;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 440

 Score = 34.7 bits (76), Expect = 1.7
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +3

Query: 153 HSIDHSPHIANGRLVPTRRPDHLYCPIYR 239
           H +   PH A   L  T  P HLYCPIYR
Sbjct: 184 HLLQGDPHKAIFELSMTNEPYHLYCPIYR 212


>UniRef50_Q623B6 Cluster: Putative uncharacterized protein CBG01923;
            n=1; Caenorhabditis briggsae|Rep: Putative
            uncharacterized protein CBG01923 - Caenorhabditis
            briggsae
          Length = 2022

 Score = 33.5 bits (73), Expect = 3.8
 Identities = 19/46 (41%), Positives = 29/46 (63%)
 Frame = +3

Query: 48   YTIVQSVLYLLNCFD*KDKEITKVPSRTTPVSYRIHSIDHSPHIAN 185
            YTI+QS+L+L + FD  D ++ K   RTT + YR    D +P +A+
Sbjct: 1662 YTILQSILHLSDFFD--DPDLHKAVLRTTSIIYR-REYDLNPLLAS 1704


>UniRef50_Q1VV72 Cluster: Lipid A biosynthesis-like protein; n=3;
           Flavobacteriaceae|Rep: Lipid A biosynthesis-like protein
           - Psychroflexus torquis ATCC 700755
          Length = 209

 Score = 33.1 bits (72), Expect = 5.0
 Identities = 23/67 (34%), Positives = 31/67 (46%)
 Frame = +1

Query: 28  YAINYVPTQLFSQCYIYSTVSTEKIKK*LKCRAARRPYLIASTLLITRHILRTDALYRRD 207
           YAI +    LFS    Y  VS+EK KK +  R   +  L+AS LL     LR D      
Sbjct: 9   YAIGFAAQLLFSSRTFYQWVSSEKQKKVIAPRYFWQISLMASFLLFVYGYLRNDFSIMLG 68

Query: 208 GRITFIV 228
             +T+ +
Sbjct: 69  QSLTYFI 75


>UniRef50_Q4PHP8 Cluster: Predicted protein; n=1; Ustilago
           maydis|Rep: Predicted protein - Ustilago maydis (Smut
           fungus)
          Length = 166

 Score = 33.1 bits (72), Expect = 5.0
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +3

Query: 138 VSYRIHSIDHSPHIANGRLVPTRRP 212
           V   IH IDH PH   GR VPT +P
Sbjct: 34  VDRMIHEIDHMPHRMQGRQVPTYQP 58


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 547,544,390
Number of Sequences: 1657284
Number of extensions: 9821367
Number of successful extensions: 22043
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22037
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41488046300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)