Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0856
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081)              33   0.17 
SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)                      31   0.70 
SB_55336| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_22906| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25)                   27   8.6  
SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081)
          Length = 1617

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 147 RIHSIDHSPHIANGRLVPTRRP 212
           R H  DH+PH  NGRL+ T  P
Sbjct: 721 REHQFDHAPHFGNGRLISTPSP 742


>SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 879

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 151 STLLITRHILRTDALYRRDGRITFIVQFTVNSCSVYRRK 267
           S L+  R + +  A +  +GR+  I+ F  ++CSVY+R+
Sbjct: 369 SDLVHDRFMSKVHARFTSEGRVHSIISFYFSACSVYQRR 407


>SB_55336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 424 AVQSAARSVRQTRRGLRTTAVAHDAFAIYREVEPIITSHHGKT 552
           AVQS  +   + ++ +R  +   + F I+++ +  +T H  KT
Sbjct: 699 AVQSKTKDASERKKAIRCRSFRKELFVIFKKEQAQVTMHLDKT 741


>SB_22906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 447 CSTNQTWITYHCRRPRRLCHLQRGGANNH 533
           C TN  ++  +C++    C  Q  GAN H
Sbjct: 144 CQTNTAYMRLYCKQSCNFCSGQPNGANCH 172


>SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25)
          Length = 1486

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -1

Query: 236 VNWTIKVIRPSRRYKASVRNMWRVINRVDAIRYGRRAARHFSY 108
           V W  + IR ++R +      WR+    D +   +R   H +Y
Sbjct: 336 VPWYSEEIREAKRVRRRAERKWRITRSADDLASFKRHKNHVTY 378


>SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1080

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 451 EHFAPLTELLYTDHFTEFQAHCWRFSCHYYLIKTTKH 341
           EH AP+  + YTDH +E + H  + +C +      KH
Sbjct: 631 EH-APVCSVFYTDHASECEMH--KQACDFGFFTAVKH 664


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,500,048
Number of Sequences: 59808
Number of extensions: 330258
Number of successful extensions: 663
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)