Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0855
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 126 1e-29
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 122 2e-28
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 122 2e-28
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 109 1e-24
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 109 1e-24
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 109 1e-24
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 103 1e-22
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 103 1e-22
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 93 1e-19
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 91 6e-19
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 90 1e-18
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 88 6e-18
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 88 6e-18
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 87 1e-17
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 83 1e-16
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 82 3e-16
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 82 3e-16
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 81 5e-16
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 80 2e-15
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 80 2e-15
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 74 8e-14
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 74 8e-14
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 73 2e-13
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 72 4e-13
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 71 5e-13
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 70 1e-12
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 70 1e-12
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 69 3e-12
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 68 5e-12
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 67 9e-12
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 67 9e-12
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 67 9e-12
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 67 1e-11
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 67 1e-11
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 65 4e-11
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 64 8e-11
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 64 1e-10
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 62 3e-10
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 62 3e-10
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 61 6e-10
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 60 1e-09
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 60 1e-09
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 56 2e-08
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 56 2e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 56 3e-08
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 54 9e-08
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 52 5e-07
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 50 1e-06
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 49 3e-06
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 48 4e-06
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 48 8e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 47 1e-05
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 45 4e-05
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 45 4e-05
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 44 1e-04
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 43 2e-04
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 43 2e-04
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 43 2e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 43 2e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 41 7e-04
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 33 0.18
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 33 0.23
At2g28600.1 68415.m03476 expressed protein 33 0.23
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 30 1.3
At5g22750.1 68418.m02657 SNF2 domain-containing protein / helica... 30 1.7
At4g03070.1 68417.m00415 2-oxoglutarate-dependent dioxygenase (A... 29 2.2
At4g39080.1 68417.m05534 vacuolar proton ATPase, putative simila... 29 2.9
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 28 5.0
At5g51690.1 68418.m06409 1-aminocyclopropane-1-carboxylate synth... 28 6.7
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 27 8.8
At4g14170.1 68417.m02188 pentatricopeptide (PPR) repeat-containi... 27 8.8
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ... 27 8.8
At1g15820.1 68414.m01898 chlorophyll A-B binding protein, chloro... 27 8.8
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 126 bits (305), Expect = 1e-29
Identities = 63/104 (60%), Positives = 78/104 (75%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
LVLAPTRELA QIQQ A+ FG +S ++ TC++GG PK Q RDL++GVEIVIATPGRLID
Sbjct: 176 LVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLID 235
Query: 183 FLEKGTTNLQRCTYLVLDEADRMLIWDLNHKSEKSLSKYAQTDR 314
+E TNL+R TYLVLDEADRML + + K +S + + DR
Sbjct: 236 MMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVS-HIRPDR 278
Score = 103 bits (246), Expect = 1e-22
Identities = 48/83 (57%), Positives = 63/83 (75%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNI 430
+DMGF+PQIRKI+ IRPDRQTL WSATWPKEV++L++ +L + ++ IGS L AN I
Sbjct: 259 LDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAI 318
Query: 431 LQIVDICQEHEKENKLNVLLQEI 499
QIVD+ E +K NKL LL++I
Sbjct: 319 RQIVDVISESQKYNKLVKLLEDI 341
Score = 60.1 bits (139), Expect = 1e-09
Identities = 23/55 (41%), Positives = 41/55 (74%)
Frame = +1
Query: 517 GAKTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASIL 681
G++ ++F++TK+ + I+R +R GWPA+ + GDK+Q ERD VL +F+ G++ I+
Sbjct: 344 GSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIM 398
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 122 bits (294), Expect = 2e-28
Identities = 63/98 (64%), Positives = 73/98 (74%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
L+LAPTRELA QIQ+ + FG S VR+TC++GGAPK Q RDL RGVEIVIATPGRLID
Sbjct: 242 LILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLID 301
Query: 183 FLEKGTTNLQRCTYLVLDEADRMLIWDLNHKSEKSLSK 296
LE TNL+R TYLVLDEADRML + K +S+
Sbjct: 302 MLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQ 339
Score = 103 bits (246), Expect = 1e-22
Identities = 47/83 (56%), Positives = 62/83 (74%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNI 430
+DMGFEPQIRKI+ QIRPDRQTL+WSATWP+EV+ LA +L D + IGS L AN +I
Sbjct: 325 LDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSI 384
Query: 431 LQIVDICQEHEKENKLNVLLQEI 499
Q+++I EK N+L LL+++
Sbjct: 385 NQVIEIVPTPEKYNRLLTLLKQL 407
Score = 70.9 bits (166), Expect = 7e-13
Identities = 30/55 (54%), Positives = 41/55 (74%)
Frame = +1
Query: 517 GAKTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASIL 681
G+K +IFVETKR + ++R +R GWPA+ + GDKTQ ERD VL +FK GR+ I+
Sbjct: 410 GSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIM 464
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 122 bits (294), Expect = 2e-28
Identities = 63/98 (64%), Positives = 73/98 (74%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
L+LAPTRELA QIQ+ + FG S VR+TC++GGAPK Q RDL RGVEIVIATPGRLID
Sbjct: 242 LILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLID 301
Query: 183 FLEKGTTNLQRCTYLVLDEADRMLIWDLNHKSEKSLSK 296
LE TNL+R TYLVLDEADRML + K +S+
Sbjct: 302 MLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQ 339
Score = 103 bits (246), Expect = 1e-22
Identities = 47/83 (56%), Positives = 62/83 (74%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNI 430
+DMGFEPQIRKI+ QIRPDRQTL+WSATWP+EV+ LA +L D + IGS L AN +I
Sbjct: 325 LDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSI 384
Query: 431 LQIVDICQEHEKENKLNVLLQEI 499
Q+++I EK N+L LL+++
Sbjct: 385 NQVIEIVPTPEKYNRLLTLLKQL 407
Score = 70.9 bits (166), Expect = 7e-13
Identities = 30/55 (54%), Positives = 41/55 (74%)
Frame = +1
Query: 517 GAKTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASIL 681
G+K +IFVETKR + ++R +R GWPA+ + GDKTQ ERD VL +FK GR+ I+
Sbjct: 410 GSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIM 464
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 109 bits (263), Expect = 1e-24
Identities = 53/84 (63%), Positives = 65/84 (77%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
LVL+PTRELA QIQ+ A FG +S + TC++GGAPK Q RDLERG +IV+ATPGRL D
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
LE +L++ +YLVLDEADRML
Sbjct: 294 ILEMRRISLRQISYLVLDEADRML 317
Score = 85.0 bits (201), Expect = 4e-17
Identities = 40/82 (48%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHN 427
+DMGFEPQIRKI+++I RQTLM++ATWPK V+K+A D L + Q+NIG++ +L AN +
Sbjct: 317 LDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKS 376
Query: 428 ILQIVDICQEHEKENKLNVLLQ 493
I Q +++ EK+ +L +L+
Sbjct: 377 ITQHIEVVAPMEKQRRLEQILR 398
Score = 60.9 bits (141), Expect = 8e-10
Identities = 29/58 (50%), Positives = 39/58 (67%)
Frame = +1
Query: 511 EPGAKTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
EPG+K IIF TKR + ++RN+ R + A + GDK+Q ERD VL QF+ GR +LV
Sbjct: 401 EPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLV 457
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 109 bits (263), Expect = 1e-24
Identities = 53/84 (63%), Positives = 65/84 (77%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
LVL+PTRELA QIQ+ A FG +S + TC++GGAPK Q RDLERG +IV+ATPGRL D
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
LE +L++ +YLVLDEADRML
Sbjct: 294 ILEMRRISLRQISYLVLDEADRML 317
Score = 85.0 bits (201), Expect = 4e-17
Identities = 40/82 (48%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHN 427
+DMGFEPQIRKI+++I RQTLM++ATWPK V+K+A D L + Q+NIG++ +L AN +
Sbjct: 317 LDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKS 376
Query: 428 ILQIVDICQEHEKENKLNVLLQ 493
I Q +++ EK+ +L +L+
Sbjct: 377 ITQHIEVVAPMEKQRRLEQILR 398
Score = 60.9 bits (141), Expect = 8e-10
Identities = 29/58 (50%), Positives = 39/58 (67%)
Frame = +1
Query: 511 EPGAKTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
EPG+K IIF TKR + ++RN+ R + A + GDK+Q ERD VL QF+ GR +LV
Sbjct: 401 EPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLV 457
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 109 bits (263), Expect = 1e-24
Identities = 53/84 (63%), Positives = 65/84 (77%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
LVL+PTRELA QIQ+ A FG +S + TC++GGAPK Q RDLERG +IV+ATPGRL D
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
LE +L++ +YLVLDEADRML
Sbjct: 294 ILEMRRISLRQISYLVLDEADRML 317
Score = 85.0 bits (201), Expect = 4e-17
Identities = 40/82 (48%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHN 427
+DMGFEPQIRKI+++I RQTLM++ATWPK V+K+A D L + Q+NIG++ +L AN +
Sbjct: 317 LDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKS 376
Query: 428 ILQIVDICQEHEKENKLNVLLQ 493
I Q +++ EK+ +L +L+
Sbjct: 377 ITQHIEVVAPMEKQRRLEQILR 398
Score = 60.9 bits (141), Expect = 8e-10
Identities = 29/58 (50%), Positives = 39/58 (67%)
Frame = +1
Query: 511 EPGAKTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
EPG+K IIF TKR + ++RN+ R + A + GDK+Q ERD VL QF+ GR +LV
Sbjct: 401 EPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLV 457
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 103 bits (246), Expect = 1e-22
Identities = 50/84 (59%), Positives = 63/84 (75%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
LVL+PTRELA QIQ A FG +S + C++GGAPK Q +++ERGV+IV+ATPGRL D
Sbjct: 305 LVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLND 364
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
LE +L + +YLVLDEADRML
Sbjct: 365 ILEMKRISLHQVSYLVLDEADRML 388
Score = 87.4 bits (207), Expect = 8e-18
Identities = 40/82 (48%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHN 427
+DMGFEPQIRKI+ ++ RQTLM++ATWPKEV+K+A D L + Q+NIG++ +L AN +
Sbjct: 388 LDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKS 447
Query: 428 ILQIVDICQEHEKENKLNVLLQ 493
I Q +++ EK ++L +L+
Sbjct: 448 ITQTIEVLAPMEKHSRLEQILR 469
Score = 60.9 bits (141), Expect = 8e-10
Identities = 29/58 (50%), Positives = 40/58 (68%)
Frame = +1
Query: 511 EPGAKTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
EPG+K IIF TKR + ++RN+ R + A + GDK+Q ERD+VL QF+ GR +LV
Sbjct: 472 EPGSKIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLV 528
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 103 bits (246), Expect = 1e-22
Identities = 50/84 (59%), Positives = 62/84 (73%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
L+LAPTRELA QIQ A FG +S + TC++GGAPK Q ++LERG +IV+ATPGRL D
Sbjct: 511 LILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLND 570
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
LE + Q+ + LVLDEADRML
Sbjct: 571 ILEMKMIDFQQVSLLVLDEADRML 594
Score = 95.1 bits (226), Expect = 4e-20
Identities = 44/82 (53%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHN 427
+DMGFEPQIRKI+ +I P RQTLM++ATWPKEV+K+A D L + +Q+NIG + +L+AN
Sbjct: 594 LDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKA 653
Query: 428 ILQIVDICQEHEKENKLNVLLQ 493
I Q V++ + EKE +L +L+
Sbjct: 654 ITQYVEVVPQMEKERRLEQILR 675
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/58 (46%), Positives = 42/58 (72%)
Frame = +1
Query: 511 EPGAKTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
E G+K IIF TKR ++++R++ R+ + AV + GDKTQ ERD VL QF+ G++ +L+
Sbjct: 678 ERGSKVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCVLI 734
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 93.5 bits (222), Expect = 1e-19
Identities = 44/84 (52%), Positives = 59/84 (70%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
++L+PTRELA QI A F + + V+ +GG P +Q R+LERGV+I++ATPGRL D
Sbjct: 228 VILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLND 287
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
LE+G +LQ +L LDEADRML
Sbjct: 288 LLERGRVSLQMVRFLALDEADRML 311
Score = 68.5 bits (160), Expect = 4e-12
Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 4/118 (3%)
Frame = +2
Query: 173 IN*FLGKGHNQLTAVHIFSS**G*SYVDMGFEPQIRKIIEQI-RPD---RQTLMWSATWP 340
+N L +G L V + +DMGFEPQIRKI++Q+ P RQT+++SAT+P
Sbjct: 285 LNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFP 344
Query: 341 KEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSKN 514
+E+++LA D+L +YI + +G + S+ I+Q V+ + +K + L LL ++ N
Sbjct: 345 REIQRLASDFLSNYIFLAVGRVG-SSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGN 401
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = +1
Query: 520 AKTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
A T++FVETK+ A+++ + G+PA + GD++QQER+ L FK GR ILV
Sbjct: 406 ALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILV 460
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 91.1 bits (216), Expect = 6e-19
Identities = 42/84 (50%), Positives = 58/84 (69%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
++L+PTRELA QI A F + + V+ +GG P +Q R+LERGV+I++ATPGRL D
Sbjct: 241 VILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLND 300
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
LE+ ++Q +L LDEADRML
Sbjct: 301 LLERARVSMQMIRFLALDEADRML 324
Score = 69.7 bits (163), Expect = 2e-12
Identities = 38/84 (45%), Positives = 59/84 (70%), Gaps = 4/84 (4%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQI----RPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSA 418
+DMGFEPQIRKI+EQ+ R RQTL++SAT+P+E+++LA D+L +YI + +G + S+
Sbjct: 324 LDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVG-SS 382
Query: 419 NHNILQIVDICQEHEKENKLNVLL 490
I+Q V+ + +K + L LL
Sbjct: 383 TDLIVQRVEFVLDSDKRSHLMDLL 406
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/55 (49%), Positives = 37/55 (67%)
Frame = +1
Query: 520 AKTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
A T++FVETKR A+++ + G+PA + GD+TQQER+ L FK GR ILV
Sbjct: 419 ALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILV 473
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 90.2 bits (214), Expect = 1e-18
Identities = 45/84 (53%), Positives = 56/84 (66%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
+V+APTRELAQQI++ F H R T + GG EQ + +G EIVIATPGRLID
Sbjct: 393 VVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLID 452
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
LE+ L +C Y+VLDEADRM+
Sbjct: 453 CLERRYAVLNQCNYVVLDEADRMI 476
Score = 46.0 bits (104), Expect = 2e-05
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 17/107 (15%)
Frame = +2
Query: 251 VDMGFEPQIRKIIE-----QIRPD------------RQTLMWSATWPKEVKKLAEDYLGD 379
+DMGFEPQ+ +++ ++P+ R T M+SAT P V++LA YL +
Sbjct: 476 IDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRN 535
Query: 380 YIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSKNLV 520
+ + IG+ + + I Q V + +E EK +L LL E+G+ +V
Sbjct: 536 PVVVTIGTAGKTTD-LISQHVIMMKESEKFFRLQKLLDELGEKTAIV 581
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +1
Query: 511 EPGAKT-IIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
E G KT I+FV TK+ ++I++N+ + G+ + G K+Q++R+ L F+ R ++LV
Sbjct: 573 ELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLV 631
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 87.8 bits (208), Expect = 6e-18
Identities = 41/84 (48%), Positives = 57/84 (67%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
++L+PTRELA QI A F + + V+ +GG P +Q R+LERG +I++ATPGRL D
Sbjct: 233 VILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLND 292
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
LE+ ++Q +L LDEADRML
Sbjct: 293 LLERARVSMQMIRFLALDEADRML 316
Score = 69.3 bits (162), Expect = 2e-12
Identities = 37/84 (44%), Positives = 58/84 (69%), Gaps = 4/84 (4%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQI----RPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSA 418
+DMGFEPQIRKI+EQ+ R RQT+++SAT+P ++++LA D++ +YI + +G + S+
Sbjct: 316 LDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVG-SS 374
Query: 419 NHNILQIVDICQEHEKENKLNVLL 490
I Q V+ QE +K + L LL
Sbjct: 375 TDLITQRVEFVQESDKRSHLMDLL 398
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/53 (47%), Positives = 34/53 (64%)
Frame = +1
Query: 526 TIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
T++FVETKR A+ + + +PA + GD+TQQER+ L FK GR ILV
Sbjct: 411 TLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILV 463
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 87.8 bits (208), Expect = 6e-18
Identities = 41/84 (48%), Positives = 57/84 (67%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
++L+PTRELA QI A F + + V+ +GG P +Q R+LERG +I++ATPGRL D
Sbjct: 233 VILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLND 292
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
LE+ ++Q +L LDEADRML
Sbjct: 293 LLERARVSMQMIRFLALDEADRML 316
Score = 69.3 bits (162), Expect = 2e-12
Identities = 37/84 (44%), Positives = 58/84 (69%), Gaps = 4/84 (4%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQI----RPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSA 418
+DMGFEPQIRKI+EQ+ R RQT+++SAT+P ++++LA D++ +YI + +G + S+
Sbjct: 316 LDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVG-SS 374
Query: 419 NHNILQIVDICQEHEKENKLNVLL 490
I Q V+ QE +K + L LL
Sbjct: 375 TDLITQRVEFVQESDKRSHLMDLL 398
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/53 (47%), Positives = 34/53 (64%)
Frame = +1
Query: 526 TIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
T++FVETKR A+ + + +PA + GD+TQQER+ L FK GR ILV
Sbjct: 411 TLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILV 463
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 86.6 bits (205), Expect = 1e-17
Identities = 48/105 (45%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
++ APTRELA QI A F +R + V+GG K EQ ++L+ G EIV+ATPGRLID
Sbjct: 305 VICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLID 364
Query: 183 FLEKGTTNLQRCTYLVLDEADRMLIWDLNHKSE-KSLSKYAQTDR 314
L+ + R +YLVLDEADRM +DL + + +S+ + DR
Sbjct: 365 MLKMKALTMMRASYLVLDEADRM--FDLGFEPQVRSIVGQIRPDR 407
Score = 76.6 bits (180), Expect = 1e-14
Identities = 38/82 (46%), Positives = 59/82 (71%)
Frame = +2
Query: 254 DMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNIL 433
D+GFEPQ+R I+ QIRPDRQTL++SAT P +V+KLA + L D I++ +G + + AN +I
Sbjct: 389 DLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGM-ANEDIT 447
Query: 434 QIVDICQEHEKENKLNVLLQEI 499
Q+V++ + KL LL+++
Sbjct: 448 QVVNVIPSDAE--KLPWLLEKL 467
Score = 31.1 bits (67), Expect = 0.72
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +1
Query: 529 IIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
++F K + I + + + GDK Q R E L +FK G +L+
Sbjct: 477 LVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLI 528
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 83.4 bits (197), Expect = 1e-16
Identities = 41/84 (48%), Positives = 54/84 (64%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
LVL+PTRELA QI V + G +++ CV+GG+ K Q + GV+IVI TPGRL D
Sbjct: 195 LVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRD 254
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
+E L +++VLDEADRML
Sbjct: 255 LIESNVLRLSDVSFVVLDEADRML 278
Score = 77.4 bits (182), Expect = 8e-15
Identities = 37/92 (40%), Positives = 64/92 (69%), Gaps = 2/92 (2%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLG-DYIQINIGSLQLSANHN 427
+DMGFE +R I+ RQ +M+SATWP +V KLA++++ + I++ IGS+ L+ANH+
Sbjct: 278 LDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHD 337
Query: 428 ILQIVDICQEHEKENKLNVLLQEIGQS-KNLV 520
++QI+++ E ++ +L LL++ +S KN V
Sbjct: 338 VMQIIEVLDERARDQRLIALLEKYHKSQKNRV 369
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/54 (38%), Positives = 32/54 (59%)
Frame = +1
Query: 523 KTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
+ ++F K +AE + R +++ GW AV + G+K Q ER L FKEG +LV
Sbjct: 368 RVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLV 421
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 82.2 bits (194), Expect = 3e-16
Identities = 39/85 (45%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGVEIVIATPGRLI 179
LVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R L+ GV++ + TPGR+I
Sbjct: 182 LVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVI 238
Query: 180 DFLEKGTTNLQRCTYLVLDEADRML 254
D +++G NL ++VLDEAD+ML
Sbjct: 239 DLMKRGALNLSEVQFVVLDEADQML 263
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +1
Query: 517 GAKTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
G K I+F +TKR A+ +S + R + + GD +Q +R+ L F++G +ILV
Sbjct: 349 GGKCIVFTQTKRDADRLSYALAR-SFKCEALHGDISQSQRERTLAGFRDGHFNILV 403
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/49 (28%), Positives = 31/49 (63%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 397
+ +GF + I+E++ RQ++M+SAT P ++ L + YL + + +++
Sbjct: 263 LQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDL 311
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 82.2 bits (194), Expect = 3e-16
Identities = 38/85 (44%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGVEIVIATPGRLI 179
LVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R+L G+++ + TPGR+I
Sbjct: 194 LVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPGRII 250
Query: 180 DFLEKGTTNLQRCTYLVLDEADRML 254
D +++G NL ++VLDEAD+ML
Sbjct: 251 DLMKRGALNLSEVQFVVLDEADQML 275
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/56 (33%), Positives = 33/56 (58%)
Frame = +1
Query: 517 GAKTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
G K I+F +TKR A+ ++ + + + + GD +Q +R+ L F++G SILV
Sbjct: 361 GGKCIVFTQTKRDADRLAFGLAK-SYKCEALHGDISQAQRERTLAGFRDGNFSILV 415
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/49 (28%), Positives = 31/49 (63%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 397
+ +GF + I++++ RQ++M+SAT P ++ L + YL + + I++
Sbjct: 275 LQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDL 323
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 81.4 bits (192), Expect = 5e-16
Identities = 44/86 (51%), Positives = 56/86 (65%), Gaps = 3/86 (3%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
LV+APTREL QQI F +R V+GG+ +Q +L+RG EIV+ TPGR+ID
Sbjct: 606 LVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMID 665
Query: 183 FL--EKG-TTNLQRCTYLVLDEADRM 251
L G TNL+R T+LV+DEADRM
Sbjct: 666 ILCTSSGKITNLRRVTFLVMDEADRM 691
Score = 71.7 bits (168), Expect = 4e-13
Identities = 35/81 (43%), Positives = 56/81 (69%)
Frame = +2
Query: 254 DMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNIL 433
DMGFEPQI +II+ IRP+RQT+++SAT+P++V+ LA L ++I +G + N +I
Sbjct: 693 DMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSV-VNKDIT 751
Query: 434 QIVDICQEHEKENKLNVLLQE 496
Q+V++ E ++ +L LL E
Sbjct: 752 QLVEVRPESDRFLRLLELLGE 772
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 79.8 bits (188), Expect = 2e-15
Identities = 40/84 (47%), Positives = 54/84 (64%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
LVLAPTRELA+Q+++ + Y+ CV+GG Q L RGV++V+ TPGR+ID
Sbjct: 184 LVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIID 241
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
+E + L YLVLDEAD+ML
Sbjct: 242 LIEGRSLKLGEVEYLVLDEADQML 265
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +2
Query: 257 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 397
+GFE + I+E + RQ++++SAT P VKKLA YL + + I++
Sbjct: 267 VGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDL 313
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/56 (33%), Positives = 33/56 (58%)
Frame = +1
Query: 517 GAKTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
G KTI+F +TKR A+ +S + + GD +Q +R+ L F++G+ ++LV
Sbjct: 351 GGKTIVFTQTKRDADEVSLALSN-SIATEALHGDISQHQRERTLNAFRQGKFTVLV 405
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 79.8 bits (188), Expect = 2e-15
Identities = 44/86 (51%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
LV+APTREL QQI F + V+GG+ +Q +L+RG EIV+ TPGR+ID
Sbjct: 473 LVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMID 532
Query: 183 FL--EKG-TTNLQRCTYLVLDEADRM 251
L G TNL+R TYLV+DEADRM
Sbjct: 533 ILCTSSGKITNLRRVTYLVMDEADRM 558
Score = 76.2 bits (179), Expect = 2e-14
Identities = 37/81 (45%), Positives = 57/81 (70%)
Frame = +2
Query: 254 DMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNIL 433
DMGFEPQI +I++ IRPDRQT+++SAT+P++V+ LA L ++I +G + N +I
Sbjct: 560 DMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSV-VNKDIT 618
Query: 434 QIVDICQEHEKENKLNVLLQE 496
Q+V+I E E+ ++L LL E
Sbjct: 619 QLVEIRPESERFSRLLELLGE 639
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 74.1 bits (174), Expect = 8e-14
Identities = 39/84 (46%), Positives = 49/84 (58%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
LVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+ TPGR+ D
Sbjct: 111 LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 170
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
L++ + VLDEAD ML
Sbjct: 171 MLKRQSLRADNIKMFVLDEADEML 194
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = +1
Query: 523 KTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
+++IFV T+RK + ++ +R GD Q RD ++ +F+ G + +L+
Sbjct: 280 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 333
Score = 31.1 bits (67), Expect = 0.72
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Frame = +2
Query: 260 GFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQI 439
GF+ QI I + + P Q ++SAT P E ++ ++ ++I + +L+
Sbjct: 197 GFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFY 256
Query: 440 VDICQEHEKENKLNVLLQEIGQSKNLV-----RKQ*FLL-KPREKLRTYQGT*GDM 589
V++ +E K L L + + +++++ RK +L K R + T T GDM
Sbjct: 257 VNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDM 312
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 74.1 bits (174), Expect = 8e-14
Identities = 39/84 (46%), Positives = 48/84 (57%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
LVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+ TPGR+ D
Sbjct: 113 LVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFD 172
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
L + + VLDEAD ML
Sbjct: 173 LLRRQSLRADAIKMFVLDEADEML 196
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = +1
Query: 523 KTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
+++IFV T+RK + ++ +R GD Q RD ++ +F+ G + +L+
Sbjct: 282 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 335
Score = 28.3 bits (60), Expect = 5.0
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Frame = +2
Query: 260 GFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQI 439
GF+ QI I + + Q ++SAT P E ++ ++ ++I + +L+
Sbjct: 199 GFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFY 258
Query: 440 VDICQEHEKENKLNVLLQEIGQSKNLV-----RKQ*FLL-KPREKLRTYQGT*GDM 589
V++ +E K L L + + +++++ RK +L K R + T T GDM
Sbjct: 259 VNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDM 314
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 72.5 bits (170), Expect = 2e-13
Identities = 39/84 (46%), Positives = 48/84 (57%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
LVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+ TPGR+ D
Sbjct: 111 LVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 170
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
L + + VLDEAD ML
Sbjct: 171 MLRRQSLRPDCIKMFVLDEADEML 194
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = +1
Query: 523 KTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
+++IFV T+RK + ++ +R GD Q RD ++ +F+ G + +L+
Sbjct: 280 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 333
Score = 30.7 bits (66), Expect = 0.95
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Frame = +2
Query: 260 GFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQI 439
GF+ QI I + + P Q ++SAT P E ++ ++ ++I + +L+
Sbjct: 197 GFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFY 256
Query: 440 VDICQEHEKENKLNVLLQEIGQSKNLV-----RKQ*FLL-KPREKLRTYQGT*GDM 589
V++ +E K L L + + +++++ RK +L K R + T T GDM
Sbjct: 257 VNVEKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDM 312
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 71.7 bits (168), Expect = 4e-13
Identities = 34/83 (40%), Positives = 50/83 (60%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
+VL PTREL++Q+ +VA H + R+ V GG+ R Q L +++V+ TPGR++
Sbjct: 193 VVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQ 252
Query: 183 FLEKGTTNLQRCTYLVLDEADRM 251
+E+G YLVLDEAD M
Sbjct: 253 HIEEGNMVYGDIAYLVLDEADTM 275
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 71.3 bits (167), Expect = 5e-13
Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Frame = +3
Query: 3 LVLAPTRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQARDLERGVEIVIAT 164
L++ P+RELA+Q ++Q A Y +R+ GG R Q ++RGV IV+AT
Sbjct: 226 LIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVAT 285
Query: 165 PGRLIDFLEKGTTNLQRCTYLVLDEADRML 254
PGRL D L K +L C YL LDEADR++
Sbjct: 286 PGRLKDMLAKKKMSLDACRYLTLDEADRLV 315
Score = 51.2 bits (117), Expect = 6e-07
Identities = 24/72 (33%), Positives = 44/72 (61%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNI 430
VD+GFE IR++ + + RQTL++SAT P +++ A L + +N+G +AN ++
Sbjct: 315 VDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAG-AANLDV 373
Query: 431 LQIVDICQEHEK 466
+Q V+ ++ K
Sbjct: 374 IQEVEYVKQEAK 385
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 70.1 bits (164), Expect = 1e-12
Identities = 36/84 (42%), Positives = 47/84 (55%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
+VLAPTREL Q++ A G + V GG P Q +++GVE++I TPGR++D
Sbjct: 190 MVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVD 249
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
L K T L VLDE D ML
Sbjct: 250 LLSKHTIELDNIMTFVLDEVDCML 273
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 70.1 bits (164), Expect = 1e-12
Identities = 36/84 (42%), Positives = 47/84 (55%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
+VLAPTREL Q++ A G + V GG P Q +++GVE++I TPGR++D
Sbjct: 53 MVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVD 112
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
L K T L VLDE D ML
Sbjct: 113 LLSKHTIELDNIMTFVLDEVDCML 136
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 68.9 bits (161), Expect = 3e-12
Identities = 35/84 (41%), Positives = 51/84 (60%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
LVL PTRELA+Q+ +G + + + C++GG Q L+RGV+IV+ TPGR+ D
Sbjct: 178 LVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKD 237
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
+E+ + + VLDEAD ML
Sbjct: 238 HIERQNLDFSYLQFRVLDEADEML 261
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +2
Query: 257 MGFEPQIRKIIEQIRPDR--QTLMWSATWPKEVKKLAEDYL-GDYIQIN-IGSLQLSANH 424
MGF + I+ ++ QTL++SAT P VK ++ +L D I+ +G+ ++ A++
Sbjct: 263 MGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASN 322
Query: 425 NILQIVDICQE 457
++ I C +
Sbjct: 323 SVRHIAIPCNK 333
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 68.1 bits (159), Expect = 5e-12
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 179
LVL+P+RELA Q ++ G HT+ + C+ GG E + LERGV V TPGR+
Sbjct: 94 LVLSPSRELASQTEKTIQAIGAHTNIQAHACI-GGKSIGEDIKKLERGVHAVSGTPGRVY 152
Query: 180 DFLEKGTTNLQRCTYLVLDEADRML 254
D +++G+ + LVLDE+D ML
Sbjct: 153 DMIKRGSLQTKAVKLLVLDESDEML 177
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/54 (31%), Positives = 34/54 (62%)
Frame = +1
Query: 523 KTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
+ IIF T++K + ++ +R + M GDK Q+ERD+++ QF+ ++ +L+
Sbjct: 263 QAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLI 316
Score = 31.9 bits (69), Expect = 0.41
Identities = 19/73 (26%), Positives = 37/73 (50%)
Frame = +2
Query: 260 GFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQI 439
G + QI + + D Q + SAT P+E+ ++ E ++ D ++I + +L+
Sbjct: 180 GLKDQIYDVYRALPHDIQVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYY 239
Query: 440 VDICQEHEKENKL 478
VD+ +E K + L
Sbjct: 240 VDVDKEEWKFDTL 252
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 67.3 bits (157), Expect = 9e-12
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Frame = +3
Query: 3 LVLAPTRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQARDLERGVEIVIAT 164
LV+ P+RELA+Q ++Q A Y +R+ GG R Q +++GV IV+AT
Sbjct: 177 LVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVAT 236
Query: 165 PGRLIDFLEKGTTNLQRCTYLVLDEADRML 254
PGRL D L K +L C L LDEADR++
Sbjct: 237 PGRLKDILAKKKMSLDACRLLTLDEADRLV 266
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/72 (33%), Positives = 43/72 (59%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNI 430
VD+GFE IR + + + RQTL++SAT P +++ A L + +N+G +AN ++
Sbjct: 266 VDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAG-AANLDV 324
Query: 431 LQIVDICQEHEK 466
+Q V+ ++ K
Sbjct: 325 IQEVEYVKQEAK 336
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 529 IIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
+IF E K ++I + G AV + G K Q++RD + FK G+ +LV
Sbjct: 352 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLV 403
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 67.3 bits (157), Expect = 9e-12
Identities = 32/97 (32%), Positives = 54/97 (55%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
+++ PTRELA Q QV + G ++ GG ++ L + V +++ TPGR++D
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILD 262
Query: 183 FLEKGTTNLQRCTYLVLDEADRMLIWDLNHKSEKSLS 293
+KG L+ C+ LV+DEAD++L + E +S
Sbjct: 263 LTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLIS 299
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/86 (27%), Positives = 46/86 (53%)
Frame = +2
Query: 263 FEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIV 442
F+P + +I + RQ LM+SAT+P VK + +L + IN+ +L+ I Q
Sbjct: 290 FQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMD-ELTLK-GITQFY 347
Query: 443 DICQEHEKENKLNVLLQEIGQSKNLV 520
+E +K + LN L ++ +++++
Sbjct: 348 AFVEERQKIHCLNTLFSKLQINQSII 373
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 67.3 bits (157), Expect = 9e-12
Identities = 32/97 (32%), Positives = 54/97 (55%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
+++ PTRELA Q QV + G ++ GG ++ L + V +++ TPGR++D
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILD 262
Query: 183 FLEKGTTNLQRCTYLVLDEADRMLIWDLNHKSEKSLS 293
+KG L+ C+ LV+DEAD++L + E +S
Sbjct: 263 LTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLIS 299
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/86 (27%), Positives = 46/86 (53%)
Frame = +2
Query: 263 FEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIV 442
F+P + +I + RQ LM+SAT+P VK + +L + IN+ +L+ I Q
Sbjct: 290 FQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMD-ELTLK-GITQFY 347
Query: 443 DICQEHEKENKLNVLLQEIGQSKNLV 520
+E +K + LN L ++ +++++
Sbjct: 348 AFVEERQKIHCLNTLFSKLQINQSII 373
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 66.9 bits (156), Expect = 1e-11
Identities = 31/84 (36%), Positives = 48/84 (57%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
++L PTRELA Q QV + ++ GG R+ L + V +++ TPGR++D
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILD 255
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
+KG L+ C LV+DEAD++L
Sbjct: 256 LTKKGVCVLKDCAMLVMDEADKLL 279
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/86 (27%), Positives = 48/86 (55%)
Frame = +2
Query: 263 FEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIV 442
F+P + ++I+ + +RQ LM+SAT+P VK + +L IN+ QL+ + Q
Sbjct: 283 FQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMD-QLTL-MGVTQYY 340
Query: 443 DICQEHEKENKLNVLLQEIGQSKNLV 520
+E +K + LN L ++ +++++
Sbjct: 341 AFVEERQKVHCLNTLFSKLQINQSII 366
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 66.9 bits (156), Expect = 1e-11
Identities = 31/84 (36%), Positives = 48/84 (57%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
++L PTRELA Q QV + ++ GG R+ L + V +++ TPGR++D
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILD 255
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
+KG L+ C LV+DEAD++L
Sbjct: 256 LTKKGVCVLKDCAMLVMDEADKLL 279
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/86 (27%), Positives = 48/86 (55%)
Frame = +2
Query: 263 FEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIV 442
F+P + ++I+ + +RQ LM+SAT+P VK + +L IN+ QL+ + Q
Sbjct: 283 FQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMD-QLTL-MGVTQYY 340
Query: 443 DICQEHEKENKLNVLLQEIGQSKNLV 520
+E +K + LN L ++ +++++
Sbjct: 341 AFVEERQKVHCLNTLFSKLQINQSII 366
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/84 (36%), Positives = 47/84 (55%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
++L PTRELA Q QV + + GG R+ L + V +++ TPGR++D
Sbjct: 226 VILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILD 285
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
+KG L+ C LV+DEAD++L
Sbjct: 286 LAKKGVCVLKDCAMLVMDEADKLL 309
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/86 (30%), Positives = 47/86 (54%)
Frame = +2
Query: 263 FEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIV 442
F+P I ++I+ + RQ LM+SAT+P VK + YL IN+ QL+ + Q
Sbjct: 313 FQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPYIINLMD-QLTL-MGVTQYY 370
Query: 443 DICQEHEKENKLNVLLQEIGQSKNLV 520
+E +K + LN L ++ +++++
Sbjct: 371 AFVEERQKVHCLNTLFSKLQINQSII 396
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 64.1 bits (149), Expect = 8e-11
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 179
L+L+PTRELA Q ++ G H + + C+ GG E R LE GV +V TPGR+
Sbjct: 107 LILSPTRELATQTEKTIQAIGLHANIQAHACI-GGNSVGEDIRKLEHGVHVVSGTPGRVC 165
Query: 180 DFLEKGTTNLQRCTYLVLDEADRML 254
D +++ + + L+LDE+D ML
Sbjct: 166 DMIKRRSLRTRAIKLLILDESDEML 190
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +1
Query: 523 KTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
+ +IF TKRK + +S +R + + M GD Q+ERD ++ +F+ G + +L+
Sbjct: 276 QAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLI 329
Score = 31.5 bits (68), Expect = 0.54
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 260 GFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 391
GF+ QI + + PD Q + SAT P E+ ++ ++ + ++I
Sbjct: 193 GFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKI 236
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 63.7 bits (148), Expect = 1e-10
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
L+L PTRELA QI + + + ++ + GG REQ L +IV+ATPGR+ID
Sbjct: 242 LILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMID 301
Query: 183 FLEKG-TTNLQRCTYLVLDEADRML 254
L + +L L+LDEADR+L
Sbjct: 302 HLRNSMSVDLDDLAVLILDEADRLL 326
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 260 GFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 364
GF +I +++ RQT+++SAT +EVK+L +
Sbjct: 329 GFATEITELVRLCPKRRQTMLFSATMTEEVKELVK 363
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 62.5 bits (145), Expect = 3e-10
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTC--VFGGAPKREQARDLERGVEIVIATPGRL 176
LV+ PTRELA Q VA + Y T V GG ++ +A L +GV +++ATPGRL
Sbjct: 230 LVICPTRELAIQSYGVAKEL--LKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRL 287
Query: 177 IDFLEKGTTNL-QRCTYLVLDEADRMLIWDLNHKSEKSLSKYAQT 308
+D LE + + +LV+DEADR+L + +K L+ +T
Sbjct: 288 LDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKT 332
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 397
++ FE ++KI+ + RQT ++SAT +V+ LA L + I++
Sbjct: 314 LEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVEDLARVSLTSPVYIDV 362
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 62.1 bits (144), Expect = 3e-10
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
L+L+PTR+LA+Q + + G + +R + + GG +Q +L +G +++IATPGRL+
Sbjct: 102 LILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPGRLMH 161
Query: 183 FL-EKGTTNLQRCTYLVLDEADRM 251
L E L+ Y+V DEAD +
Sbjct: 162 LLSEVDDMTLRTVEYVVFDEADSL 185
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +2
Query: 245 SYVDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 364
S MGF Q+ +I+ Q+ +RQTL++SAT P + + A+
Sbjct: 184 SLFGMGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAK 223
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 61.3 bits (142), Expect = 6e-10
Identities = 41/99 (41%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Frame = +3
Query: 6 VLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDF 185
VL+PTRELA QI + G +R + GG + +Q L + +++ATPGRL D
Sbjct: 94 VLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDH 153
Query: 186 LE--KGTTNLQRCTYLVLDEADRMLIWDLNHKSEKSLSK 296
+ KG + L+ YLVLDEADR+ LN EKSL++
Sbjct: 154 MSDTKGFS-LKSLKYLVLDEADRL----LNEDFEKSLNQ 187
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 514 PGAKTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
P + ++IF T ++ +R G+ A+ + G TQ +R L +FK G +ILV
Sbjct: 259 PESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILV 315
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 60.5 bits (140), Expect = 1e-09
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 1/124 (0%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
+V+ PTRELA Q + VA + + V GG +R +A+ + G +VIATPGRL+D
Sbjct: 165 IVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLD 224
Query: 183 FLEKGTTNL-QRCTYLVLDEADRMLIWDLNHKSEKSLSKYAQTDRL*CGQLLGPKK*RNL 359
L+ + + LV+DEADR+L + K L +T + K ++L
Sbjct: 225 HLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDL 284
Query: 360 LRIT 371
R++
Sbjct: 285 ARVS 288
Score = 31.1 bits (67), Expect = 0.72
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 397
++ FE + KI++ + RQT ++SAT +VK LA L + +++
Sbjct: 249 LEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLARVSLTSPVHVDV 297
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 60.1 bits (139), Expect = 1e-09
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
L++ PTRELA Q+ + + V+ + GG +Q R L+ EIV+ATPGRL +
Sbjct: 283 LIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWE 342
Query: 183 FL---EKGTTNLQRCTYLVLDEADRML 254
+ EK L ++ VLDEADRM+
Sbjct: 343 LMSAGEKHLVELHSLSFFVLDEADRMV 369
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 56.0 bits (129), Expect = 2e-08
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDLER-GVEIVIATPGRL 176
++++PTREL+ QI VA F T + V + + GG + + +E G ++I TPGRL
Sbjct: 94 VIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRL 153
Query: 177 IDFLEK-GTTNLQRCTYLVLDEADRML 254
D +E+ + + L+LDEADR+L
Sbjct: 154 SDIMERMEILDFRNLEILILDEADRLL 180
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/49 (30%), Positives = 33/49 (67%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 397
++MGF+ Q+ II ++ R+T ++SAT + V++LA+ L + +++ +
Sbjct: 180 LEMGFQRQVNYIISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVEV 228
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 56.0 bits (129), Expect = 2e-08
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSY-VRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 179
+VL PT ELA Q+ + R+ V GG +R Q +LE+GV+++IATPGR
Sbjct: 455 IVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPGRFT 514
Query: 180 DFLEKGTTNLQRCTYLVLDEAD 245
+ +G L +LDE D
Sbjct: 515 YLMNEGILGLSNLRCAILDEVD 536
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 55.6 bits (128), Expect = 3e-08
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 179
LV+ PTREL Q+ + H ++ V GG K ++ L +G+ I+IATPGRL+
Sbjct: 108 LVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLL 167
Query: 180 DFLEKGTTNLQR-CTYLVLDEADRML 254
D L+ + + + +++ DEAD +L
Sbjct: 168 DHLKNTASFVHKNLRWVIFDEADSIL 193
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 54.0 bits (124), Expect = 9e-08
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDL-ERGVEIVIATPGRL 176
++++PTREL+ QI +VA F T V + + GG L E G ++I TPGRL
Sbjct: 94 VIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRL 153
Query: 177 IDFLEK-GTTNLQRCTYLVLDEADRML 254
D +++ + + L+LDEADR+L
Sbjct: 154 SDMMKRMEFLDFRNLEILILDEADRLL 180
Score = 38.7 bits (86), Expect = 0.004
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNI 430
+DMGF+ Q+ II ++ R+T ++SAT + V LA+ L + +++ G+ S +
Sbjct: 180 LDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSG 239
Query: 431 LQIVDI-CQEHEKENKLNVLLQEIGQSKNLV 520
L + C+ +K ++L LL E ++K LV
Sbjct: 240 LYCEYLKCEADQKSSQLVHLLIE-NKNKKLV 269
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 51.6 bits (118), Expect = 5e-07
Identities = 34/87 (39%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
LV+ PTRELA Q+ + G +R + + GG Q L IVI TPGR+
Sbjct: 130 LVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKV 189
Query: 183 FLEKG---TTNLQRCTYLVLDEADRML 254
LE R +LVLDEADR+L
Sbjct: 190 LLENNPDVPPVFSRTKFLVLDEADRVL 216
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 364
+D+GF+ ++R I + + RQTL++SAT ++ L E
Sbjct: 216 LDVGFQDELRTIFQCLPKSRQTLLFSATMTSNLQALLE 253
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Frame = +3
Query: 3 LVLAPTRELAQQI-QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVE-IVIATPGRL 176
+++AP+REL QI ++V G + GGA + Q L++ IV+ TPGR+
Sbjct: 195 MIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRI 254
Query: 177 IDFLEKGTTNLQRCTYLVLDEADRMLIWDLNHKSEKSL 290
+ + G + C +LVLDE D +L ++ + L
Sbjct: 255 AEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRIL 292
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 48.8 bits (111), Expect = 3e-06
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Frame = +3
Query: 3 LVLAPTRELAQQI--QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 176
L+L PTRELA QI + A H T + G + +Q R +I+IATPGRL
Sbjct: 456 LILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRL 515
Query: 177 IDFLEKG---TTNLQRCTYLVLDEADRMLIWDLNHKSE 281
+D +E T+ L ++DEAD L+ DL K +
Sbjct: 516 LDHIENKSGLTSRLMALKLFIVDEAD--LLLDLGFKRD 551
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL-GDYIQINIGSLQLSANHN 427
+D+GF+ + KII+ + RQ+L++SAT PKEV+++++ L D+ I+ L H+
Sbjct: 544 LDLGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHD 603
Query: 428 ILQIVDICQEHE 463
++ I HE
Sbjct: 604 KVKQSCIVAPHE 615
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 48.4 bits (110), Expect = 4e-06
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Frame = +3
Query: 3 LVLAPTRELAQQI--QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 176
L+L PTRELA QI + A H T + G K +Q R +I+IATPGRL
Sbjct: 409 LILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGRL 468
Query: 177 IDFLEKG---TTNLQRCTYLVLDEADRMLIWDLNHKSEK 284
+D +E T+ L ++DEAD +L EK
Sbjct: 469 LDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEK 507
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL-GDYIQINIGSLQLSANHN 427
+D+GF + KII+ + RQ+L++SAT PKEV+++++ L D+ I+ L H+
Sbjct: 497 LDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHD 556
Query: 428 ILQIVDICQEHE 463
++ I HE
Sbjct: 557 KVRQSCIVAPHE 568
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 47.6 bits (108), Expect = 8e-06
Identities = 37/102 (36%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 176
LV+ PTRELA Q A H S + G EQ R +I++ATPGRL
Sbjct: 134 LVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPGRL 193
Query: 177 IDFLEKG---TTNLQRCTYLVLDEADRMLIWDLNHKSEKSLS 293
D +E T L+ LVLDEAD +L E+ +S
Sbjct: 194 KDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIIS 235
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/36 (44%), Positives = 26/36 (72%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKL 358
+DMGF I +II + +RQT ++SAT P+EV+++
Sbjct: 222 LDMGFRKDIERIISAVPKERQTFLFSATVPEEVRQI 257
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 47.2 bits (107), Expect = 1e-05
Identities = 35/89 (39%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 176
LV+ PTRELA Q A H S + G EQ R +I++ATPGRL
Sbjct: 462 LVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRL 521
Query: 177 IDFLEKGT---TNLQRCTYLVLDEADRML 254
D +E + T L LVLDEAD +L
Sbjct: 522 KDHIENTSGFATRLMGVKVLVLDEADHLL 550
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL-GDYIQINIGSLQLSANH- 424
+DMGF I +II + RQT ++SAT P+EV+++ L D+ IN H
Sbjct: 550 LDMGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQ 609
Query: 425 NILQIVDICQEHEKENKLNVLLQE 496
+ Q+ I + L+VLL+E
Sbjct: 610 KVTQMYMIASLDRHFSLLHVLLKE 633
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 45.2 bits (102), Expect = 4e-05
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Frame = +3
Query: 3 LVLAPTRELA-QQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG-VEIVIATPGRL 176
LV+ PTRELA Q + + + V GG + R L++ +I++ATPGRL
Sbjct: 160 LVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPGRL 219
Query: 177 IDFLEKGT---TNLQRCTYLVLDEADRMLIWDLNHKSEKSLS 293
D ++ + T L LVLDEAD +L + E+ ++
Sbjct: 220 KDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIA 261
Score = 34.7 bits (76), Expect = 0.058
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKL 358
+DMGF +I +II + RQT ++SAT EV+++
Sbjct: 248 LDMGFRREIERIIAAVPKQRQTFLFSATVSDEVRQI 283
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/46 (50%), Positives = 34/46 (73%), Gaps = 2/46 (4%)
Frame = +3
Query: 123 ARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRML 254
+++LE V+I++ATPGRL+D + KG T L+ YLV+DE DR+L
Sbjct: 159 SQNLESAVDILVATPGRLMDHINNTKGFT-LEHLRYLVVDETDRLL 203
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/54 (31%), Positives = 34/54 (62%)
Frame = +1
Query: 523 KTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
+TIIFV+TK A+ + + + G+ + G+ T+ +RD+++ +FKE +L+
Sbjct: 342 QTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLI 395
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQA--RDLERGVEIVIATPGRL 176
L + PTRELA Q +V G + + + + A R +VI TPG L
Sbjct: 166 LCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTPGTL 225
Query: 177 IDFLEKGTTNLQRCTYLVLDEADRMLIWD 263
++ L LV DEAD ML D
Sbjct: 226 KKWMAFKRLGLNHLKILVFDEADHMLATD 254
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNT--CVFGGAPKREQARDLERGV--EIVIATPG 170
LVL TRELA QI F ++Y+ +T VF G + +DL + IV+ TPG
Sbjct: 118 LVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPG 175
Query: 171 RLIDFLEKGTTNLQRCTYLVLDEADRML 254
R++ + +L+ + +LDE D+ML
Sbjct: 176 RVLALAREKDLSLKNVRHFILDECDKML 203
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/75 (28%), Positives = 40/75 (53%)
Frame = +2
Query: 275 IRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQ 454
+++I + D+Q +M+SAT KE++ + + ++ D ++I + H ++Q
Sbjct: 212 VQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS 271
Query: 455 EHEKENKLNVLLQEI 499
E EK KLN LL +
Sbjct: 272 EMEKNRKLNDLLDAL 286
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +1
Query: 523 KTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
+ +IFV++ +A +++ + +P++C+ +Q+ER FKEG ILV
Sbjct: 290 QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILV 343
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNT--CVFGGAPKREQARDLERGV--EIVIATPG 170
LVL TRELA QI F ++Y+ +T VF G + +DL + IV+ TPG
Sbjct: 35 LVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPG 92
Query: 171 RLIDFLEKGTTNLQRCTYLVLDEADRML 254
R++ + +L+ + +LDE D+ML
Sbjct: 93 RVLALAREKDLSLKNVRHFILDECDKML 120
Score = 40.7 bits (91), Expect = 9e-04
Identities = 21/75 (28%), Positives = 40/75 (53%)
Frame = +2
Query: 275 IRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQ 454
+++I + D+Q +M+SAT KE++ + + ++ D ++I + H ++Q
Sbjct: 129 VQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS 188
Query: 455 EHEKENKLNVLLQEI 499
E EK KLN LL +
Sbjct: 189 EMEKTRKLNDLLDAL 203
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +1
Query: 523 KTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
+ +IFV++ +A +++ + +P++C+ +Q+ER FKEG ILV
Sbjct: 207 QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILV 260
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNT--CVFGGAPKREQARDLERGV--EIVIATPG 170
LVL TRELA QI F ++Y+ +T VF G + +DL + IV+ TPG
Sbjct: 118 LVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPG 175
Query: 171 RLIDFLEKGTTNLQRCTYLVLDEADRML 254
R++ + +L+ + +LDE D+ML
Sbjct: 176 RVLALAREKDLSLKNVRHFILDECDKML 203
Score = 40.7 bits (91), Expect = 9e-04
Identities = 21/75 (28%), Positives = 40/75 (53%)
Frame = +2
Query: 275 IRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQ 454
+++I + D+Q +M+SAT KE++ + + ++ D ++I + H ++Q
Sbjct: 212 VQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS 271
Query: 455 EHEKENKLNVLLQEI 499
E EK KLN LL +
Sbjct: 272 EMEKTRKLNDLLDAL 286
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +1
Query: 523 KTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
+ +IFV++ +A +++ + +P++C+ +Q+ER FKEG ILV
Sbjct: 290 QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILV 343
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
++++PTRELA Q V G + GG + ++ + I++ PGRL+
Sbjct: 147 IIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQ 206
Query: 183 FLEKGTTNLQ--RCTYLVLDEADRML 254
+++ T N + + L+LDEADR+L
Sbjct: 207 HMDE-TPNFECPQLQILILDEADRVL 231
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSAN-HN 427
+D F+ Q+ II Q+ RQTL++SAT K+VK LA L D I++ + ++A +
Sbjct: 231 LDSAFKGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTS 290
Query: 428 ILQIVDICQEHEKENKL 478
++Q V I +K + L
Sbjct: 291 LMQTVMIVPVEKKLDML 307
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 41.1 bits (92), Expect = 7e-04
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
++++PTREL+ QI +VA + + V E E G ++I TPGRL D
Sbjct: 95 VIISPTRELSAQIHKVARAV-RLDFAKCREVEADMNTLE-----EEGANLLIGTPGRLSD 148
Query: 183 FLEK-GTTNLQRCTYLVLDEADRML 254
+++ + + L+LDEADR+L
Sbjct: 149 MMKRMEFLDFRNLEILILDEADRLL 173
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 364
+DMGF+ Q+ II ++ R+T ++SAT + V LA+
Sbjct: 173 LDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAK 210
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 33.1 bits (72), Expect = 0.18
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSY--VRNTCVF----GGAPKREQARDLERGVEIVIAT 164
+++ PTREL Q+ +VA S V+ V GG +R ++ I++AT
Sbjct: 148 VIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVAT 207
Query: 165 PGRLIDFLEKGTTNLQRCTYLVLDEAD 245
L LEK + LV+DE D
Sbjct: 208 VASLCHMLEKHIFRIDSVRVLVVDEVD 234
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 32.7 bits (71), Expect = 0.23
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 176
++L+P RELA Q + G ++R P + A + +++I+TP RL
Sbjct: 214 VILSPARELAAQTAREGKKLIKGSNFHIRLMT----KPLVKTADFSKLWCDVLISTPMRL 269
Query: 177 IDFLEKGTTNLQRCTYLVLDEADRM 251
++ +L + YLVLDE+D++
Sbjct: 270 KRAIKAKKIDLSKVEYLVLDESDKL 294
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLER-GVEIVIATPGRLI 179
L L P++ A Q++ V + + GAP Q L+ E ++ATP RL+
Sbjct: 200 LYLVPSQSKASQVRSVCKALKGIG-IHTVSLHQGAPLDHQISGLKSVEPEFIVATPERLL 258
Query: 180 DFLEKGTTNLQRCTYLVLDE 239
+ + ++ + LV+DE
Sbjct: 259 EIVTLKGVDISNVSLLVIDE 278
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +2
Query: 293 QIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKEN 472
+I + Q + + P++++K D GDYI +G ++ A IL ++D + E EN
Sbjct: 27 EIFDEDQAIYLMISLPEQIEKF--DGRGDYI---LGKTKILARFEILDVIDALKIEEDEN 81
Query: 473 K 475
K
Sbjct: 82 K 82
>At5g22750.1 68418.m02657 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1029
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +1
Query: 517 GAKTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
G+K+I+F + + + + R + V + G +QQ+R++VL +F E SILV
Sbjct: 879 GSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSED-GSILV 933
>At4g03070.1 68417.m00415 2-oxoglutarate-dependent dioxygenase
(AOP1.2) identical to GI:16118887; contains PF03171:
2OG-Fe(II) oxygenase superfamily domain
Length = 322
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 328 SYLAQRSEETC*GLLGRLHSDQYRIITTFRKSQHSS 435
S L + C L GRLHS +R+I T +K+++S+
Sbjct: 230 SVLVMVGDSLCALLNGRLHSPYHRVIMTGKKTRYST 265
>At4g39080.1 68417.m05534 vacuolar proton ATPase, putative similar
to Swiss-Prot:Q93050 vacuolar proton translocating
ATPase 116 kDa subunit A isoform 1 (Clathrin-coated
vesicle/synaptic vesicle proton pump 116 kDa subunit,
Vacuolar proton pump subunit 1, Vacuolar adenosine
triphosphatase subunit Ac116) [Homo sapiens]
Length = 821
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/73 (23%), Positives = 32/73 (43%)
Frame = +3
Query: 72 SYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRM 251
S + C GA + + DL R +++ GRL + L + L+ D+
Sbjct: 254 SKILKICEAFGANRYPFSEDLGRQAQMITEVSGRLSELKTTIDAGLGQRNILLQTIGDKF 313
Query: 252 LIWDLNHKSEKSL 290
+W+L + EK++
Sbjct: 314 ELWNLKVRKEKAI 326
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 28.3 bits (60), Expect = 5.0
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Frame = +3
Query: 6 VLAPTRELAQQIQQVAADFGHTSYVRNTCV-FGGAPKREQARDLERGV-EIVIATPGRLI 179
+L P+REL QQ+ + V+ V + R+ G+ EI+++TP +
Sbjct: 125 ILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTPACIP 184
Query: 180 DFLEKG----TTNLQRCTYLVLDEADRML 254
G T + + LVLDEAD +L
Sbjct: 185 KCFAAGVLEPTAVSESLSILVLDEADLLL 213
Score = 27.5 bits (58), Expect = 8.8
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Frame = +2
Query: 260 GFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI---GSLQLSANHNI 430
G+E +R + I Q L+ SAT +V+KL + L + I + + + + N+
Sbjct: 216 GYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVLTLTEDNDKEEAVPSNV 275
Query: 431 LQIVDICQEHEKENKLNVLLQ-EIGQSKNLV 520
Q C +K + LL+ E+ Q K L+
Sbjct: 276 QQFWISCSAQDKLLHILALLKLEVVQKKILI 306
>At5g51690.1 68418.m06409 1-aminocyclopropane-1-carboxylate
synthase, putative / ACC synthase, putative similar to
ACC synthases from Solanum tuberosum [GI:520958],
Triticum aestivum [GI:1173638]
Length = 495
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -3
Query: 639 ISFLLSFIARHANSWPAISPYVP*YVLSFSLGFNKNYCFRTRFLLCPISCNNTFN 475
I L +A H N++ +PY P GF+++ FRT L P+ C ++ N
Sbjct: 190 IEVLAFCLADHGNAFLIPTPYYP--------GFDRDIKFRTGVELIPVHCRSSDN 236
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +1
Query: 517 GAKTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
G K+I+F + + + +RR G+ + G Q+ R++VL +F E + ++
Sbjct: 1127 GEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNETKQKTIL 1182
>At4g14170.1 68417.m02188 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 458
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = -2
Query: 454 LTNIYNLKNVVICGKL**SYIDLNVVSQVILSKFLHFFGPSS*PHQSLSVWAYLLNDFSD 275
L + NVV+ KL +Y LN + LS F H P++++ W ++ +FS
Sbjct: 38 LLRTFLYSNVVLSSKLVLAYSKLNHLFPTSLSVFWHM------PYRNIFSWNIIIGEFSR 91
Query: 274 LWFKS 260
F S
Sbjct: 92 SGFAS 96
>At1g79350.1 68414.m09247 DNA-binding protein, putative contains
Pfam PF00628: PHD-finger domain; contains TIGRFAMS
TIGR01053: zinc finger domain, LSD1 subclass; contains
Pfam PF00271: Helicase conserved C-terminal domain;
similar to WSSV086 (GI:19481678)[shrimp white spot
syndrome virus]; similar to nuclear protein Np95
(GI:17939938) [Mus musculus]
Length = 1299
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 150 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLIWDLNHKSE 281
+V T LI EKG + LQ+ E D +LI+D HK++
Sbjct: 353 VVFLTYNSLIASSEKGRSRLQQLVQWCGPEFDGLLIFDECHKAK 396
>At1g15820.1 68414.m01898 chlorophyll A-B binding protein,
chloroplast (LHCB6) nearly identical to Lhcb6 protein
[Arabidopsis thaliana] GI:4741960; contains Pfam profile
PF00504: Chlorophyll A-B binding protein
Length = 258
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 278 RKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGD 379
++ ++ PD Q++ W+ W K + A +Y GD
Sbjct: 159 KRWVDFFNPDSQSVEWATPWSKTAENFA-NYTGD 191
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,906,674
Number of Sequences: 28952
Number of extensions: 306571
Number of successful extensions: 1074
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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