Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0854
(543 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 116 1e-26
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 116 1e-26
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 110 5e-25
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak... 31 0.66
At2g14120.2 68415.m01573 dynamin-like protein 2b (ADL2b) identic... 29 2.0
At2g14120.1 68415.m01572 dynamin-like protein 2b (ADL2b) identic... 29 2.0
At2g48010.1 68415.m06009 serine/threonine protein kinase (RFK3) ... 29 2.7
At1g30750.1 68414.m03758 expressed protein 29 2.7
At5g15490.1 68418.m01813 UDP-glucose 6-dehydrogenase, putative v... 27 6.1
At5g10520.1 68418.m01218 protein kinase family protein contains ... 27 6.1
At3g29360.1 68416.m03687 UDP-glucose 6-dehydrogenase, putative v... 27 8.1
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 116 bits (279), Expect = 1e-26
Identities = 47/66 (71%), Positives = 59/66 (89%)
Frame = +3
Query: 309 SIAPCPSVRYGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRA 488
S+ CP V+YGKRVHILP+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F+VRGGMR+
Sbjct: 105 SVHQCPDVKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRS 164
Query: 489 VEFKVV 506
VEFKV+
Sbjct: 165 VEFKVI 170
Score = 111 bits (267), Expect = 3e-25
Identities = 49/79 (62%), Positives = 65/79 (82%)
Frame = +1
Query: 19 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 198
+D+K+ D STAIL RK PNRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKK 67
Query: 199 RKETVCIVLSDDNCPDEKI 255
RK+TVCI L+D+ C + KI
Sbjct: 68 RKDTVCIALADETCEEPKI 86
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 116 bits (279), Expect = 1e-26
Identities = 47/66 (71%), Positives = 59/66 (89%)
Frame = +3
Query: 309 SIAPCPSVRYGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRA 488
S+ CP V+YGKRVHILP+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F+VRGGMR+
Sbjct: 105 SVHQCPDVKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRS 164
Query: 489 VEFKVV 506
VEFKV+
Sbjct: 165 VEFKVI 170
Score = 114 bits (274), Expect = 4e-26
Identities = 51/79 (64%), Positives = 66/79 (83%)
Frame = +1
Query: 19 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 198
+D+KS D STAIL RK PNRL+V+EA++DDNSVV+L A ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKK 67
Query: 199 RKETVCIVLSDDNCPDEKI 255
RK+TVCI L+D+ C + KI
Sbjct: 68 RKDTVCIALADETCEEPKI 86
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 110 bits (265), Expect = 5e-25
Identities = 42/66 (63%), Positives = 58/66 (87%)
Frame = +3
Query: 309 SIAPCPSVRYGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRA 488
S+ CP V+YG RVHILP+DD++EG++GN+F+ YLKPYF+EAYRP+ + D F+VRGGMR+
Sbjct: 106 SVHQCPDVKYGNRVHILPLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRGGMRS 165
Query: 489 VEFKVV 506
+EFKV+
Sbjct: 166 IEFKVI 171
Score = 101 bits (243), Expect = 2e-22
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 1/80 (1%)
Frame = +1
Query: 19 ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 195
+D+K + D STAIL +K NRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK
Sbjct: 8 SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGK 67
Query: 196 RRKETVCIVLSDDNCPDEKI 255
+RK+TVCI L+D+ C + KI
Sbjct: 68 KRKDTVCIALADETCDEPKI 87
>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
similarity to Pfam domain PF01612: 3'-5' exonuclease
Length = 263
Score = 30.7 bits (66), Expect = 0.66
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -1
Query: 171 TTEELKLLHFGL*KCHD*VVIAD 103
TTEELK+ H+ L KC D +V+A+
Sbjct: 3 TTEELKISHYKLYKCFDFLVVAN 25
>At2g14120.2 68415.m01573 dynamin-like protein 2b (ADL2b) identical
to dynamin like protein 2b (ADL2b) [Arabidopsis
thaliana] GI:19032339
Length = 780
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 269 NTVHPIFSSGQLSSESTMQTVSLRRLP 189
NT HP F G + E MQTV R+P
Sbjct: 508 NTSHPNFIGGTKAVEQAMQTVKSSRIP 534
>At2g14120.1 68415.m01572 dynamin-like protein 2b (ADL2b) identical
to dynamin like protein 2b (ADL2b) [Arabidopsis
thaliana] GI:19032339
Length = 780
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 269 NTVHPIFSSGQLSSESTMQTVSLRRLP 189
NT HP F G + E MQTV R+P
Sbjct: 508 NTSHPNFIGGTKAVEQAMQTVKSSRIP 534
>At2g48010.1 68415.m06009 serine/threonine protein kinase (RFK3)
identical to receptor-like serine/threonine kinase
[Arabidopsis thaliana] gi|2465927|gb|AAC50045
Length = 617
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 158 NSSVVTQS--CSRANAARKPFASCSQTIIALMRKSDEPCCEKQPSCASF 298
NSS+ T + C+ + + P ASC+Q++ A P CASF
Sbjct: 124 NSSLATTAMRCNTSLESNTPCASCTQSLSAFQPYLSGPSLGNVSDCASF 172
>At1g30750.1 68414.m03758 expressed protein
Length = 212
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = +2
Query: 56 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRANAARKPFAS 220
SS +P + S++ F++P + FN + + S S ++A +PF +
Sbjct: 115 SSTGLNNPILGQPSTSSSLNQPLTGFNQPSSTGFNQPISSSSSSSSSAQNQPFTN 169
>At5g15490.1 68418.m01813 UDP-glucose 6-dehydrogenase, putative very
strong similarity to SP|Q96558 UDP-glucose
6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase)
(UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam
profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase
family NAD binding domain, PF00984:
UDP-glucose/GDP-mannose dehydrogenase family central
domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase
family UDP binding domain
Length = 480
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -3
Query: 514 ICATTLNSTARMPPRTMKVSSRWIGR*ASM-KYGFKYTSNRLPVRPSTESSIGSMWTRFP 338
+C L AR+ +V+ I R +M K+ + + + P+ P+T + W +
Sbjct: 349 VCKGLLGDKARLSIYDPQVTEEQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVAWDAYT 408
Query: 337 YLTEGHG 317
+ HG
Sbjct: 409 ATKDAHG 415
>At5g10520.1 68418.m01218 protein kinase family protein contains
protein kinase domain, INTERPRO:IPR000719
Length = 467
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 14 KWQIIKALMIYR-PRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNF 157
++ +I L Y R ++ R P L+ +SA T +++ +P W NF
Sbjct: 95 RFSVIPLLASYELTRKNLRRKQP--KLTPSESAFTCEAFFMAKPSWRNF 141
>At3g29360.1 68416.m03687 UDP-glucose 6-dehydrogenase, putative very
strong similarity to SP|Q96558 UDP-glucose
6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase)
(UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam
profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase
family NAD binding domain, PF00984:
UDP-glucose/GDP-mannose dehydrogenase family central
domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase
family UDP binding domain
Length = 480
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -3
Query: 514 ICATTLNSTARMPPRTMKVSSRWIGR*ASM-KYGFKYTSNRLPVRPSTESSIGSMWTRFP 338
+C L AR+ +V+ I R SM K+ + + + P+ P+T + W +
Sbjct: 349 VCKGLLEDKARLSIYDPQVTEDQIQRDLSMNKFDWDHPLHLQPMSPTTVKQVTVTWDAYE 408
Query: 337 YLTEGHG 317
+ HG
Sbjct: 409 ATKDAHG 415
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,582,313
Number of Sequences: 28952
Number of extensions: 251230
Number of successful extensions: 741
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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