Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0850
(756 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16640.1 68416.m02127 translationally controlled tumor family... 56 3e-08
At3g05540.1 68416.m00607 translationally controlled tumor family... 46 4e-05
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 34 0.089
At1g63910.1 68414.m07236 myb family transcription factor (MYB103... 29 3.3
At1g80960.3 68414.m09501 F-box protein-related contains weak hit... 29 4.4
At1g80960.2 68414.m09500 F-box protein-related contains weak hit... 29 4.4
At1g80960.1 68414.m09499 F-box protein-related contains weak hit... 29 4.4
>At3g16640.1 68416.m02127 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 168
Score = 56.0 bits (129), Expect = 3e-08
Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Frame = +1
Query: 61 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 231
M +Y+D++TGDE+ SD++ K ++ +++EV G+ VT D+ I G NPSAEE DEG
Sbjct: 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNI-GANPSAEEGGEDEG 59
Query: 232 TDSAVE 249
D + +
Sbjct: 60 VDDSTQ 65
Score = 41.9 bits (94), Expect = 4e-04
Identities = 29/85 (34%), Positives = 38/85 (44%)
Frame = +3
Query: 255 VDIVLNHRLVETYAFGDKKSYTLYLKDYMXXXXXXXXXXXXDQVEVFKTNMNKVMKDILG 434
VDIV RL E + DKK + Y+K Y+ DQ VFK + K +L
Sbjct: 68 VDIVDTFRLQEQPTY-DKKGFIAYIKKYIKLLTPKLSEE--DQA-VFKKGIEGATKFLLP 123
Query: 435 RFKELQFFTGESMDCDGMVAMMEYR 509
R + QFF GE M D + Y+
Sbjct: 124 RLSDFQFFVGEGMHDDSTLVFAYYK 148
>At3g05540.1 68416.m00607 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 156
Score = 45.6 bits (103), Expect = 4e-05
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 VDIVLNHRLVETYAFGDKKSYTLYLKDYMXXXXXXXXXXXXDQVEVFKTNMNKVMKDILG 434
VDI+ RL E +F DKK + +++K Y+ + E+FK ++ K ++
Sbjct: 55 VDIIDTFRLQEQPSF-DKKQFVMFMKRYIKQLSPKLDS---ENQELFKKHIESATKFLMS 110
Query: 435 RFKELQFFTGESMDC-DGMVAMMEYR 509
+ K+ QFF GESM+ +G + YR
Sbjct: 111 KLKDFQFFVGESMEGEEGSLVFAYYR 136
Score = 36.7 bits (81), Expect = 0.017
Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +1
Query: 61 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSA 213
M +Y+DI+TGDE+ SD++ K ++ +++EV G+ + +G + EG + A
Sbjct: 1 MLVYQDILTGDELLSDSFPYKEIENGMLWEVEGKNPSGEEGG-EDEGVDDQA 51
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 34.3 bits (75), Expect = 0.089
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 88 GDEMFSDTYKMKLVDEVIYEVT--GRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESG 255
G+ S K +++D V+ +T G +T +G+ EGF P+AEEAD+G S + G
Sbjct: 238 GEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGE---EGFLPTAEEADDGIGSMMMGG 292
>At1g63910.1 68414.m07236 myb family transcription factor (MYB103)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 370
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -1
Query: 171 SRHQPTGHFVNNFIDQFHFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKN 16
SRHQP+ V D + E T+ + + +LHFDG N N N
Sbjct: 124 SRHQPSVTTVTLNADTTSIATTIEASTTTTSTIDNLHFDGFTDSPNQLNFTN 175
>At1g80960.3 68414.m09501 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 462
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = -1
Query: 612 SLELLSYLLSNI*NFS---SSRPCLKNIMIGICVPSKSYIP 499
+L+LLS + I F+ +S PCL+ +++GIC KS +P
Sbjct: 213 TLKLLSIVAPEIGVFNRVLASCPCLEVLVLGICCFKKSRVP 253
>At1g80960.2 68414.m09500 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 486
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = -1
Query: 612 SLELLSYLLSNI*NFS---SSRPCLKNIMIGICVPSKSYIP 499
+L+LLS + I F+ +S PCL+ +++GIC KS +P
Sbjct: 213 TLKLLSIVAPEIGVFNRVLASCPCLEVLVLGICCFKKSRVP 253
>At1g80960.1 68414.m09499 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 486
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = -1
Query: 612 SLELLSYLLSNI*NFS---SSRPCLKNIMIGICVPSKSYIP 499
+L+LLS + I F+ +S PCL+ +++GIC KS +P
Sbjct: 213 TLKLLSIVAPEIGVFNRVLASCPCLEVLVLGICCFKKSRVP 253
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,587,973
Number of Sequences: 28952
Number of extensions: 310762
Number of successful extensions: 690
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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