Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0848
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66840.1 68418.m08427 SAP domain-containing protein contains ...    31   1.1  
At2g30210.1 68415.m03674 laccase, putative / diphenol oxidase, p...    28   7.5  
At5g39770.1 68418.m04817 repair endonuclease family protein cont...    27   9.9  
At3g25290.1 68416.m03158 auxin-responsive family protein similar...    27   9.9  

>At5g66840.1 68418.m08427 SAP domain-containing protein contains
           Pfam domain PF02037: SAP domain
          Length = 551

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 475 RRVIFGHFKTDPRLHRPGHFYKPASALNHENRPFPNNKKRL 353
           R++  G+   D RL +PGH  KP      +N    N  +RL
Sbjct: 260 RKIKSGYVLKDGRLQKPGHVKKPCQVKTRKNEKDENLTQRL 300


>At2g30210.1 68415.m03674 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 570

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 430 RPGHFYKPASALNHENRPFPN 368
           RPG +Y  A A N  N PF N
Sbjct: 278 RPGRYYMAARAYNSANAPFDN 298


>At5g39770.1 68418.m04817 repair endonuclease family protein
           contains Pfam PF02732 : ERCC4 domain; similar to MUS81
           endonuclease (GI:16755674) [Mus musculus]; similar to
           repair endonuclease (TIGR:At5g41150) [Arabidopsis
           thaliana]
          Length = 1242

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -3

Query: 730 DYFSDSIHSSLFNVKINAAFESTKSLNITI*NLLVIKKSITAF 602
           D+ S  + S L  +++  AF ++KSL++T+ + L   KS+  F
Sbjct: 624 DWSSWRLLSILIFMRLGGAFSASKSLDLTLGSDLCCHKSVNPF 666


>At3g25290.1 68416.m03158 auxin-responsive family protein similar to
           auxin-induced protein AIR12 GI:11357190 [Arabidopsis
           thaliana]
          Length = 393

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 74  GDNSAFINFRCIQNAGNFK*SEASIYLLYMIEK-KKTHKDCFYENIY 211
           G+ S  I F   +N G    + A+I +  M+ + KK HK  FY NIY
Sbjct: 278 GNESEGIRFSAHRNIGIALFTLATIQMFAMLLRPKKDHKYRFYWNIY 324


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,895,884
Number of Sequences: 28952
Number of extensions: 297234
Number of successful extensions: 600
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)