Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0843
         (754 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.062
SB_25625| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_50697| Best HMM Match : C2 (HMM E-Value=0.59)                       29   5.4  
SB_9973| Best HMM Match : Gp5_C (HMM E-Value=9.9)                      29   5.4  
SB_49906| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_47583| Best HMM Match : SAP (HMM E-Value=8.9e-08)                   28   7.1  
SB_32949| Best HMM Match : SAP (HMM E-Value=1)                         28   7.1  
SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_8753| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)              28   9.4  

>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 35.1 bits (77), Expect = 0.062
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +2

Query: 350 LNEELSYCRGLGVPAIMISIHGRESNNLARILQTYYETSHHPSLIWACVPMLCVE 514
           L +E++Y   LG+P++M+ +      NLA  +      SH   L W  VPM C E
Sbjct: 118 LMQEVNYAIHLGLPSVMLELGNYNIINLAHYVNDILINSHVQQL-WIKVPMRCSE 171


>SB_25625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/52 (23%), Positives = 30/52 (57%)
 Frame = +3

Query: 57  IKKMAQQEISCGYEYIITADLQTCLTEALQCSYSFIVSPIIHPRFRRQSTNA 212
           +K    +  +  + +++TADL++ LTE+   S++++++  + P      T+A
Sbjct: 41  LKSALTESHTDSFTWLLTADLKSALTESHTDSFTWLLTADLKPALTESHTDA 92


>SB_50697| Best HMM Match : C2 (HMM E-Value=0.59)
          Length = 437

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 529 TEDDEEEKAWNEPWYWWSKFHERLDWDKRVGVVLEL 636
           T  D+E++   +   WWSKF+  +   ++ G  L+L
Sbjct: 116 TRRDKEKETMEQYVDWWSKFYASIGQAEKAGAYLDL 151


>SB_9973| Best HMM Match : Gp5_C (HMM E-Value=9.9)
          Length = 104

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +2

Query: 509 VEHIENALKMMKKRKLGMSPGTGGPNSMSALIGINVLVLFWSCLQIFHHR 658
           +  + N +++   +K+ + P +    S + +I      L  SC+Q+ HHR
Sbjct: 43  ISSVSNRMEL-SAQKVALKPASNSIPSNTIIINFVFAALHRSCMQLIHHR 91


>SB_49906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 47

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 72  QQEISCGYEYIITADLQTCLTEALQCSYSFIVSP 173
           QQ+I+ GYE +  A L +C T+ +Q +   ++ P
Sbjct: 8   QQQITTGYESVAFAILSSCRTQFMQITDRILLYP 41


>SB_47583| Best HMM Match : SAP (HMM E-Value=8.9e-08)
          Length = 407

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 409 TREREQQFSQNSPNLL*NEPPSVSNMGMCTYAM 507
           T+  +QQ S  SP+ +   PPS S  G  T AM
Sbjct: 114 TKSVKQQSSMFSPSAMLCSPPSTSTQGQTTLAM 146


>SB_32949| Best HMM Match : SAP (HMM E-Value=1)
          Length = 269

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 409 TREREQQFSQNSPNLL*NEPPSVSNMGMCTYAM 507
           T+  +QQ S  SP+ +   PPS S  G  T AM
Sbjct: 192 TKSVKQQSSMFSPSAMLCSPPSTSTQGQTTLAM 224


>SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 294 GDSLATILLVQS*VIEPYLTA*NHHFYRH 208
           G  +AT L+  S  I PY+ A NH  YR+
Sbjct: 650 GSIIATYLIFLSSAINPYIYAFNHRSYRN 678


>SB_8753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +1

Query: 469 PSVSNMGMCTYAMCRT--YRECTEDDEEEKAWNEPWYWWSKFHERLDW 606
           P  S     TY   RT  +  C  D++  +  +E  Y ++KFHE   W
Sbjct: 22  PQSSIQDKLTYPTSRTSPFEVCCIDEDGGEVGDEIGYVYAKFHETYKW 69


>SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)
          Length = 498

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 556 WNEPWYWWSKFHERLDWDKRV 618
           WN+PWY W K  +  D DK V
Sbjct: 26  WNKPWYQWDK--KENDADKTV 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,713,771
Number of Sequences: 59808
Number of extensions: 544071
Number of successful extensions: 1207
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)