Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0842
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,728... 31 0.78
06_03_0084 - 16386962-16387033,16387124-16387175,16387252-163873... 31 1.4
11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199... 30 2.4
03_06_0553 - 34682581-34683183,34683687-34683842,34684154-346842... 29 3.1
01_01_1187 + 9444742-9445317 29 3.1
03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798 29 5.5
11_01_0173 - 1392046-1392975 28 9.6
07_03_1752 - 29218348-29218524,29218593-29218736,29218957-292191... 28 9.6
>02_02_0157 -
7280335-7280541,7280656-7280762,7280918-7281097,
7281182-7281277,7281378-7281459,7281553-7283037,
7283376-7283450,7283521-7283598,7283708-7283791,
7283885-7283965,7284073-7284291,7284398-7284648,
7284748-7284796
Length = 997
Score = 31.5 bits (68), Expect = 0.78
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +2
Query: 368 QEELAEIINDFKNNVFTISEVEKLVMEWKNRNET-QQSLKEKQEQLNK 508
+E++A ++ D +NN ISE++K + E K +E Q L+ K Q++K
Sbjct: 674 KEDVARLLTDKENNDSIISELKKELEETKRLHEAHSQQLETKAAQVSK 721
>06_03_0084 -
16386962-16387033,16387124-16387175,16387252-16387313,
16387509-16387543,16387637-16387679,16388610-16388692,
16388829-16388917,16390415-16390681,16391370-16391446,
16391546-16391677,16391802-16391870,16392464-16392529,
16392603-16392773,16392848-16392916,16393005-16393086,
16393175-16393219,16393535-16393659,16394271-16394525,
16396561-16396722
Length = 651
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 295 YLTNITSWRFNVERLDSSVGEYKNTSGCC 209
Y+ I+ W FN+E L ++ NT+G C
Sbjct: 328 YIRGISGWNFNLEDLKNAAALIDNTNGTC 356
>11_06_0315 +
22318155-22318210,22319743-22319769,22319868-22319990,
22320867-22321110,22321487-22321981
Length = 314
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +2
Query: 305 TKDIRSSGSIKTSKENSPLTGQEELAEIINDFKNNVFTISEVEKLVMEWKNRNETQQSLK 484
+KD + K SKE+ PL +E + + + K S+ +K + K+ E +++LK
Sbjct: 186 SKDSKQLKPPKVSKESKPLKDSKEDKKAVKEDKKAAAKDSKEQKKAL--KDSKELKKALK 243
Query: 485 EKQEQ 499
+ +EQ
Sbjct: 244 DSKEQ 248
>03_06_0553 -
34682581-34683183,34683687-34683842,34684154-34684272,
34684691-34684793,34685027-34685299,34685411-34685602,
34686691-34687029
Length = 594
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 311 DIRSSGSIKTSKENSPLTGQEE 376
D+ +GS+ T +E S LTGQEE
Sbjct: 466 DVNINGSLDTEQEQSSLTGQEE 487
>01_01_1187 + 9444742-9445317
Length = 191
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 78 HDDTADRIQQAIENDYLFQPSNIKVESPKFRPN 176
++ T+ R+ A +Y ++P ++ E+P F PN
Sbjct: 91 YEGTSYRLSLAFPGEYPYKPPKVRFETPCFHPN 123
>03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798
Length = 289
Score = 28.7 bits (61), Expect = 5.5
Identities = 22/79 (27%), Positives = 34/79 (43%)
Frame = +1
Query: 385 NNKRLQKQRFYHIRSRKTGDGMEKQKRNSTVAERKTGTVEQVREEYDKIQHRIKENMKRP 564
NNKRL Q + R +K G +K E K + + E HR+ ++P
Sbjct: 55 NNKRLNPQGGSN-RKKKADAGTPSKKPKRQPPEPKPRKHKGAKSEKP---HRVSGEGEKP 110
Query: 565 TPFERVKKMFSKNKNKHHE 621
TP ++ KK S + K +
Sbjct: 111 TPTKKKKKKESSKEPKREK 129
>11_01_0173 - 1392046-1392975
Length = 309
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 561 SFHVFFNPVLNFIIFFPHL 505
+FH FN V FI+ FPHL
Sbjct: 138 AFHHLFNQVYIFIVSFPHL 156
>07_03_1752 -
29218348-29218524,29218593-29218736,29218957-29219148,
29219225-29219440,29219873-29220010,29220137-29220232,
29221204-29221357,29221976-29222098,29222291-29222418,
29222669-29222773,29223396-29223437,29223631-29223746,
29223805-29223916
Length = 580
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -2
Query: 163 FGLSTLIFDGWKR*SFSIACWILSAVSS*HGNSFWYSCCSLTFGSLNDA 17
+GL +F G ++ + IA + V++ + + Y C SL FG + D+
Sbjct: 436 YGLGCAVFSGNQKRAIKIASQLHCGVAAINDFASSYMCQSLPFGGVKDS 484
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,344,315
Number of Sequences: 37544
Number of extensions: 346172
Number of successful extensions: 1128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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