Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0842
(779 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47220.1 68415.m05897 3' exoribonuclease family domain 1 prot... 34 0.12
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 33 0.28
At3g24255.1 68416.m03045 expressed protein 33 0.28
At3g23910.1 68416.m03004 expressed protein 33 0.28
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 32 0.37
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 31 0.86
At1g49160.2 68414.m05512 protein kinase family protein contains ... 30 1.5
At1g49160.1 68414.m05511 protein kinase family protein contains ... 30 1.5
At5g07220.1 68418.m00823 BAG domain-containing protein contains ... 30 2.0
At1g62740.1 68414.m07081 stress-inducible protein, putative simi... 30 2.0
At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)... 30 2.0
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 29 2.6
At4g19000.1 68417.m02798 IWS1 C-terminus family protein contains... 29 3.5
At3g28770.1 68416.m03591 expressed protein 29 3.5
At5g28760.1 68418.m03532 hypothetical protein contains Pfam prof... 28 6.0
At3g51080.1 68416.m05593 zinc finger (GATA type) family protein ... 28 6.0
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam... 28 6.0
At5g55820.1 68418.m06956 expressed protein 28 8.0
At5g25810.1 68418.m03063 AP2 domain-containing transcription fac... 28 8.0
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 28 8.0
At3g31955.1 68416.m04047 hypothetical protein 28 8.0
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica... 28 8.0
>At2g47220.1 68415.m05897 3' exoribonuclease family domain 1
protein-related similar to polynucleotide phosphorylase
[Pisum sativum] GI:2286200, polyribonucleotide
phophorylase [Spinacia oleracea] GI:1924972; contains
Pfam profiles PF05266: Protein of unknown function
(DUF724), weak hit to PF01138: 3' exoribonuclease
family, domain 1
Length = 469
Score = 33.9 bits (74), Expect = 0.12
Identities = 28/107 (26%), Positives = 44/107 (41%)
Frame = +2
Query: 353 SPLTGQEELAEIINDFKNNVFTISEVEKLVMEWKNRNETQQSLKEKQEQLNKCGKNMIKF 532
S +TGQEEL +ND+K+N +S + + E K E + K L+ +
Sbjct: 113 SYITGQEELKACLNDWKSNGLVVSGLVRDQRE-KLIQEVSSTFSGKLNILSPLAQGSGNN 171
Query: 533 STGXXXXXXXXXXXXESRKCSPKTRTNITRATPALLKNEMAIRGRTV 673
G + SP T + + +TP L E +G+TV
Sbjct: 172 MGGSVMNGNTPPSLDSNESVSPVTSSPVITSTP-LEHTEAGTKGKTV 217
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 32.7 bits (71), Expect = 0.28
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = +1
Query: 385 NNKRLQKQRFYHIRSRKTGDGMEKQKRNSTVAERKTGTVEQVREEYDKIQHRIKENMKRP 564
N+K ++++ K D EKQK E+ E+ RE+ ++ + R +E M+R
Sbjct: 118 NDKGVEREHEGDRNRAKEKDRHEKQKEREREREKLEREKEREREKIEREKEREREKMERE 177
Query: 565 TPFERVKKMFSKNKNKHHE 621
FER K K + E
Sbjct: 178 I-FEREKDRLKLEKEREIE 195
>At3g24255.1 68416.m03045 expressed protein
Length = 836
Score = 32.7 bits (71), Expect = 0.28
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +2
Query: 299 LSTKDIRSSGSIKTSKENSPLTGQEELAEIINDFKNNVFTI-SEVEKLVMEWKNRNETQQ 475
L + D SS ++ SKEN P + E+ E+I+D K +F + +++E+ M K+ E
Sbjct: 537 LLSLDSMSSQDVEKSKENQPSSSSMEVCEVIDDDKFKMFELENQMEEKRMILKSL-EDLD 595
Query: 476 SLKEK 490
SL+++
Sbjct: 596 SLRKR 600
>At3g23910.1 68416.m03004 expressed protein
Length = 421
Score = 32.7 bits (71), Expect = 0.28
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +2
Query: 299 LSTKDIRSSGSIKTSKENSPLTGQEELAEIINDFKNNVFTI-SEVEKLVMEWKNRNETQQ 475
L + D SS ++ SKEN P + E+ E+I+D K +F + +++E+ M K+ E
Sbjct: 122 LLSLDSMSSQDVEKSKENQPSSSSMEVCEVIDDDKFKMFELENQMEEKRMILKSL-EDLD 180
Query: 476 SLKEK 490
SL+++
Sbjct: 181 SLRKR 185
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 32.3 bits (70), Expect = 0.37
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +1
Query: 424 RSRKTGDGMEKQKRNSTVAERKTGTVEQVREEYDKIQHRIKENMKRPTPFERVKKMFSKN 603
R ++ + +EK+KRN ER+ E EE +Q + KE ++R +R+K S N
Sbjct: 421 RQKRNEEELEKEKRNQLEEERRRENPESYLEE---LQAQYKEVLERVEQKKRLKTNGSSN 477
Query: 604 KN 609
N
Sbjct: 478 GN 479
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 31.1 bits (67), Expect = 0.86
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 544 KENMKRPTPFERVKKMFSKNKNKHHESNTGTIEKRNGNTRPN 669
++ KR +P R +K S++K H E + ++ R+G N
Sbjct: 710 QDRQKRSSPLPRAEKATSRHKRNHEERSENVVKDRSGKHHCN 751
>At1g49160.2 68414.m05512 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 557
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 436 TGDGMEKQKRNSTVAERKTGTVEQVREEYDKIQHRIKENMKRPTPFERVKKMFSKNK 606
T + E +K S E + E+++EE +KI+ R +E MK T M +KN+
Sbjct: 494 TTEDQEAEKPGSLEEEEED---ERLKEELEKIEERFREEMKEITRKREEATMETKNR 547
>At1g49160.1 68414.m05511 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 539
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 436 TGDGMEKQKRNSTVAERKTGTVEQVREEYDKIQHRIKENMKRPTPFERVKKMFSKNK 606
T + E +K S E + E+++EE +KI+ R +E MK T M +KN+
Sbjct: 476 TTEDQEAEKPGSLEEEEED---ERLKEELEKIEERFREEMKEITRKREEATMETKNR 529
>At5g07220.1 68418.m00823 BAG domain-containing protein contains
Pfam:PF02179 BAG domain
Length = 303
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +1
Query: 445 GMEKQKRNSTVAERKTGTVEQVREEYDKIQHRIKENMKRPTPFERVKKMFSKNKNKHHE 621
GM Q+R ++ V +VR +Y + H I N+ + F +KKM S HHE
Sbjct: 28 GMVVQRRTDQNSD--VPRVFRVRVKYGSVYHEI--NINSQSSFGELKKMLSDQVGLHHE 82
>At1g62740.1 68414.m07081 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 571
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 502 EQVREEYDKI--QHRIKENMKRPTPFERVKKMFSKNKNKHHESNTGTIEKRNGN 657
E V + Y K +HR E +KR ER KK + ++++ N G E+ GN
Sbjct: 339 EPVIQTYQKALTEHRNPETLKRLNEAERAKK--ELEQQEYYDPNIGDEEREKGN 390
>At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)
nearly identical to ubiquitin-conjugating enzyme UBC20
[Arabidopsis thaliana] GI:22530867; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 180
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 81 DDTADRIQQAIENDYLFQPSNIKVESPKFRPN-NLYMN 191
+ T R+ + NDY F+P +K E+ F PN ++Y N
Sbjct: 80 EGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGN 117
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/73 (28%), Positives = 39/73 (53%)
Frame = +2
Query: 275 TSDISQINLSTKDIRSSGSIKTSKENSPLTGQEELAEIINDFKNNVFTISEVEKLVMEWK 454
T D+ Q S + G+ +SK+++ TG+++ AE KNN T+SE +K+
Sbjct: 897 TVDVKQETGSPDTKKKEGASSSSKKDTK-TGEDKKAEK----KNNSETMSEGKKIDRNNT 951
Query: 455 NRNETQQSLKEKQ 493
+ E ++ + EK+
Sbjct: 952 DEKEVKEKVTEKE 964
>At4g19000.1 68417.m02798 IWS1 C-terminus family protein contains
Pfam profile PF05909: IWS1 C-terminus
Length = 406
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Frame = +1
Query: 424 RSRKTGDGMEKQKRNST-----VAERKTGTVEQVREEY-DKIQHRIKENMKRPTPFERVK 585
R +K G+EK K+N V E +Y DK+ +K K+ E +K
Sbjct: 67 RKKKDESGLEKTKKNKKQNSEEVQEMWDSITNNTNSQYGDKVV--VKPPKKKDEDAEEIK 124
Query: 586 KMFSKNKNK 612
K+FS K K
Sbjct: 125 KLFSLRKKK 133
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/74 (18%), Positives = 38/74 (51%)
Frame = +1
Query: 424 RSRKTGDGMEKQKRNSTVAERKTGTVEQVREEYDKIQHRIKENMKRPTPFERVKKMFSKN 603
+ ++ ++ +K+ E+K + +++ DK +H ++MK+ ++ KK ++
Sbjct: 1050 KEKEESRDLKAKKKEEETKEKKESENHKSKKKEDKKEHEDNKSMKKEED-KKEKKKHEES 1108
Query: 604 KNKHHESNTGTIEK 645
K++ E + +EK
Sbjct: 1109 KSRKKEEDKKDMEK 1122
>At5g28760.1 68418.m03532 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 520
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +3
Query: 558 KTDAF*KSQENVLQKQEQTSREQHRHY*KTKWQYEAEQ*LERQFFFIGPSEH 713
+ D ++ N + +E+ +++ R K +W+ + EQ ++ Q F GPSE+
Sbjct: 21 RDDMIREADVNRKEMEEEVVKKRKR---KKEWKKKTEQPMQPQRMFFGPSEY 69
>At3g51080.1 68416.m05593 zinc finger (GATA type) family protein
GATA transcription factor 3 - Arabidopsis thaliana,
PIR:T05288
Length = 312
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +2
Query: 320 SSGSIKTSKENSPLTGQEELAEIINDFKNNVFTISEVEKLVMEWKNRNETQQSLKEKQEQ 499
SS S TS +SP L F + T ++ +K V WKN +TQ + + Q
Sbjct: 166 SSSSSTTSSSSSPRPSSP-LWLASGQFLDEPMTKTQKKKKV--WKNAGQTQTQTQTQTRQ 222
Query: 500 LNKCG 514
CG
Sbjct: 223 CGHCG 227
>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 883
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +2
Query: 482 KEKQEQLNKCGKNMIKFSTGXXXXXXXXXXXXESRKCSPKTRTNITRATPALLKN 646
+E++E++ C KN +K G +KCS +T +TR ++N
Sbjct: 243 EEEEEEIIACNKNALKVCKGNKRKRRSGEGRKRRKKCS-VAKTRLTRGRKRRVRN 296
>At5g55820.1 68418.m06956 expressed protein
Length = 1826
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +1
Query: 100 SNKLLKTITSSSHQ--ISKSKARNLDQITYI*-IVPVSCRNNQKCSCTHPRKNPNVQ 261
S+ L++ +++ SH+ ++ + R++ + + V + CR NQ CS KN V+
Sbjct: 170 SHNLVRQVSNHSHEQDVNIASPRDVHEKERLPESVSIDCRENQSCSSPEHSKNQRVE 226
>At5g25810.1 68418.m03063 AP2 domain-containing transcription factor
TINY (TINY) identical to transcription factor TINY
(GP:1246403) [Arabidopsis thaliana]
Length = 218
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +2
Query: 248 IQTFNIETPTSDISQINLSTKDIRSSGSIKTSKENSPLTGQEELAEII 391
++ ++ET S S +L+ +SS S++ S +S TG EEL EI+
Sbjct: 114 LKAAHMETSQSFSSSSSLTFSSSQSSSSLE-SLVSSSATGSEELGEIV 160
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Frame = +1
Query: 349 KQPFDRPRGISGNNKRLQKQRFYHIRSRKTGDGMEKQKRNSTVAERKTGTVEQVRE---- 516
++P R + S + + +++ + + E + + + + E++ + ++ E
Sbjct: 351 EEPEKREKEDSSSQEESKEEEPENKEKEASSSQEENEIKETEIKEKEESSSQEGNENKET 410
Query: 517 EYDKIQHRIKENMKRPTPFERVKKMFSKNKNKHHESNTGTIEKRNGNTRPN 669
E + + KEN E+V+ S N K E T ++ +GN N
Sbjct: 411 EKKSSESQRKENTNSEKKIEQVESTDSSNTQKGDEQKTDESKRESGNDTSN 461
>At3g31955.1 68416.m04047 hypothetical protein
Length = 111
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 457 QKRNSTVAERKTGTVEQVREEYDKIQH-RIKENMKRPTPFERVKKMFSKN 603
+KR+S +A R+ T + E+ DK++H + E R T + + M S++
Sbjct: 47 EKRDSEIAAREAETAQITTEQKDKLEHLSLVEKYLRQTDLQFLDFMDSQS 96
>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|Q03468 Excision
repair protein ERCC-6 (Cockayne syndrome protein CSB)
{Homo sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1187
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
Frame = +1
Query: 376 ISGNNKRLQKQRFYHIRSRKTGDGMEKQKRNSTVAERKTGTVEQVREEYDKIQHRIKENM 555
+ G +RLQ+ + R+ GD + A + + R + +
Sbjct: 221 LDGFERRLQQPGPSNSRNLPEGDDENEDSSIIDRAVQSMSLAAKARPTTKLLDAEDLPKL 280
Query: 556 KRPT-PFERVKKMFSKNKNKHHESNTGTIEKRNGNTRP 666
+ PT PF R++K++ + +E+ K++ TRP
Sbjct: 281 EPPTAPFRRLRKLYKTPNSPDNEAKKRKAGKKSKKTRP 318
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,313,081
Number of Sequences: 28952
Number of extensions: 301815
Number of successful extensions: 1132
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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