Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0841
(684 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 29 2.9
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 29 2.9
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 29 2.9
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 29 2.9
At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family... 28 5.0
At1g48310.1 68414.m05396 SNF2 domain-containing protein / helica... 28 5.0
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/68 (32%), Positives = 36/68 (52%)
Frame = +3
Query: 45 KLPLKPSCYSEISHPTGTLTGSSRTDYPREHKWLI*VQQLHSRSRYKRPYRVPSLTHYLK 224
++P+ +I+HPT LTG Y E + I +QLH+R Y +PSL+ +K
Sbjct: 327 QIPILTMPNDDITHPTPDLTG-----YITEGQIYI-DRQLHNRQIYPPINVLPSLSRLMK 380
Query: 225 NAQKKRLT 248
+A + +T
Sbjct: 381 SAIGEGMT 388
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/68 (32%), Positives = 36/68 (52%)
Frame = +3
Query: 45 KLPLKPSCYSEISHPTGTLTGSSRTDYPREHKWLI*VQQLHSRSRYKRPYRVPSLTHYLK 224
++P+ +I+HPT LTG Y E + I +QLH+R Y +PSL+ +K
Sbjct: 327 QIPILTMPNDDITHPTPDLTG-----YITEGQIYI-DRQLHNRQIYPPINVLPSLSRLMK 380
Query: 225 NAQKKRLT 248
+A + +T
Sbjct: 381 SAIGEGMT 388
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/68 (32%), Positives = 36/68 (52%)
Frame = +3
Query: 45 KLPLKPSCYSEISHPTGTLTGSSRTDYPREHKWLI*VQQLHSRSRYKRPYRVPSLTHYLK 224
++P+ +I+HPT LTG Y E + I +QLH+R Y +PSL+ +K
Sbjct: 326 QIPILTMPNDDITHPTPDLTG-----YITEGQIYI-DRQLHNRQIYPPINVLPSLSRLMK 379
Query: 225 NAQKKRLT 248
+A + +T
Sbjct: 380 SAIGEGMT 387
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/68 (32%), Positives = 36/68 (52%)
Frame = +3
Query: 45 KLPLKPSCYSEISHPTGTLTGSSRTDYPREHKWLI*VQQLHSRSRYKRPYRVPSLTHYLK 224
++P+ +I+HPT LTG Y E + I +QLH+R Y +PSL+ +K
Sbjct: 325 QIPILTMPNDDITHPTPDLTG-----YITEGQIYI-DRQLHNRQIYPPINVLPSLSRLMK 378
Query: 225 NAQKKRLT 248
+A + +T
Sbjct: 379 SAIGEGMT 386
>At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family
protein contains proline-rich domains,
INTERPRO:IPR000694
Length = 310
Score = 28.3 bits (60), Expect = 5.0
Identities = 24/93 (25%), Positives = 39/93 (41%)
Frame = +3
Query: 9 ISSSSEKLAIAGKLPLKPSCYSEISHPTGTLTGSSRTDYPREHKWLI*VQQLHSRSRYKR 188
I S EK G+ PLK + + EI+ + +G RT HK ++++ R R +R
Sbjct: 74 IESYKEKWFAIGRGPLKSTHWEEIAVAASSRSGVERTSTQCRHK----IEKMRKRFRSER 129
Query: 189 PYRVPSLTHYLKNAQKKRLTSGHLTNACTPLFR 287
P N ++ +S + PL R
Sbjct: 130 QSMGPISIWPFYNQMEELDSSNPAPISARPLTR 162
>At1g48310.1 68414.m05396 SNF2 domain-containing protein / helicase
domain-containing protein contains similarity to
DNA-dependent ATPase A GI:6651385 from [Bos taurus]};
contains PFam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2
Length = 673
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 210 THYLKNAQKKRLTSGHLTNACTPLFRQKHRALML*G 317
+H+LKN Q KR T+AC P+ ++ A++L G
Sbjct: 304 SHFLKNGQAKR------TSACLPVIKKAQYAILLSG 333
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,413,144
Number of Sequences: 28952
Number of extensions: 254487
Number of successful extensions: 479
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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