Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0838
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   1e-09
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)                       30   1.7  
SB_12331| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_58175| Best HMM Match : Arm (HMM E-Value=0)                         28   9.2  

>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1107

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 26/62 (41%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
 Frame = +2

Query: 77  LKLEIKTLEQVFPKNHERFQIMSASVDELTCRFV-GKNGKKYEIHANITETYPTTPPVWF 253
           LK EI  LE+ F  ++++F++ +  +DEL CRFV   + +++ IH NI E+YP  PP+WF
Sbjct: 360 LKKEISVLEKTFGPHNKQFRVSANGLDELICRFVCPSSNEEHVIHCNIYESYPDPPPMWF 419

Query: 254 EK 259
            +
Sbjct: 420 SE 421


>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 768

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +2

Query: 8   LTWIETIYNKN*CSHTLMACLNTLKLEIKTLEQVFPKNH-ERFQIMSASVDELTCRFVGK 184
           L+ +E   NKN     L A ++TLKLE K L++  P N  +  QI S S D++ C   G+
Sbjct: 315 LSVVEQFSNKN---SRLEAEISTLKLENKQLKRQLPMNDGDNHQINSQSFDDV-CETNGR 370

Query: 185 N 187
           +
Sbjct: 371 H 371


>SB_12331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 748

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = +3

Query: 561 GRSNKDDMETEHLATLERLRQNQRPDYLSGSVSGSLQATDRLMKELRDIYRSHSFK 728
           G  +  +M+ E L T  R   N  P  LS     SLQ   +L  E+RDI R  S++
Sbjct: 189 GLQSLREMQAEGLQTHAR---NYHPLILSAVQQQSLQVAFKLCNEMRDIERRPSYR 241


>SB_58175| Best HMM Match : Arm (HMM E-Value=0)
          Length = 1472

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +2

Query: 86  EIKTLEQVFPKNHERFQIMSASVDELTCRFVGKNGKKYEIHANITET-YPTTP--PVW 250
           E + LE V    + +    S  ++    + V  NGK Y +   + ET YP +P  P+W
Sbjct: 401 EKENLEYVASDGYSKASTDSVMLESYPMKLVEINGKSYYVLNIVLETYYPASPKLPLW 458


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,828,372
Number of Sequences: 59808
Number of extensions: 448931
Number of successful extensions: 1095
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)