Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0837
(817 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 36 0.051
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 35 0.067
09_04_0159 + 15213752-15214028,15214158-15214399 32 0.63
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808... 30 1.9
06_01_0062 - 529833-530917,531392-531434 30 1.9
06_03_0538 + 21913175-21914218 29 3.3
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659... 29 3.3
04_03_0863 + 20397161-20397239,20397464-20397672,20397768-203978... 29 3.3
09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664 29 5.8
09_02_0625 + 11334418-11334499,11335067-11335164,11335758-113358... 29 5.8
07_03_0094 + 13335281-13335412,13337125-13337208,13337517-13338323 28 7.7
03_06_0527 - 34520419-34520536,34520695-34520953,34521041-34521095 28 7.7
03_04_0011 + 16398093-16398170,16401321-16401806,16401892-164023... 28 7.7
03_02_0961 + 12759701-12760054,12760294-12760420,12760719-127611... 28 7.7
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 35.5 bits (78), Expect = 0.051
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 253 RLEVAQHLGENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDE 429
R +V + GE V + +GT G+ + +G ++ PV + LGRI N G+PID
Sbjct: 97 RGQVLEVDGEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN 155
Query: 430 RGPI 441
PI
Sbjct: 156 GPPI 159
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 35.1 bits (77), Expect = 0.067
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 253 RLEVAQHLGENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDE 429
R +V + GE V + +GT G+ + +G ++ PV + LGR+ N G+PID
Sbjct: 57 RGQVLEVDGEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDN 115
Query: 430 RGPI 441
PI
Sbjct: 116 GPPI 119
>09_04_0159 + 15213752-15214028,15214158-15214399
Length = 172
Score = 31.9 bits (69), Expect = 0.63
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = +2
Query: 500 CSRDSRNW-YKSRRSARSLCQRRKDWVVWRSWCGQN--CIDYGTDQQCCQSPWWLL 658
C+ D W ++ AR+ +R D + WR C D G+ CC P W L
Sbjct: 114 CADDGGGWTWRRSGPARARARRHGDLLRWRRTLAAQRPCADDGSVGTCCGGPAWAL 169
>12_02_0893 +
24077634-24078379,24079347-24080412,24080741-24080866,
24081278-24081384,24081720-24081744
Length = 689
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3
Query: 419 GSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPSVPSMAMV 294
GSP+ R + AP G+ G+P++ ++PS+P +++
Sbjct: 452 GSPVYAQSRSPIRAPLGVSFGDPKAQ----NSRPSIPHPSLI 489
>06_01_0062 - 529833-530917,531392-531434
Length = 375
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = -1
Query: 394 DRGFQLPPGYELVSQSLVRVAHGLSLQYRPWQWSELCSHPNVGLPQVEAGRSILHLKGI* 215
D G PPG ++V V+HGL+L+ +W + GL + G +++ G
Sbjct: 239 DIGRFQPPGERNPDMNVVLVSHGLTLRVFLMRWYKWTVSQFEGLANLSNGGALVMQTGAG 298
Query: 214 NRRQVIFELHIYHSTD 167
R + L ++HS D
Sbjct: 299 GR----YSLLVHHSVD 310
>06_03_0538 + 21913175-21914218
Length = 347
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 247 PPRLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSP 360
PP + A+HL + ++ D TE V+ V D G P
Sbjct: 244 PPPMAPAEHLAQEVAKSSCADDTEAPVKMAFVFDHGEP 281
>05_02_0100 +
6594787-6594878,6595443-6595728,6595809-6595887,
6595964-6596013,6597281-6597478,6597555-6597612,
6598388-6598496,6599253-6599321,6599684-6599812,
6599970-6600082,6600386-6600479,6602827-6602917,
6604145-6604233,6604715-6604856,6605849-6606196,
6606314-6607408
Length = 1013
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 298 IAMDGTEGLVRGQPVLDSGSPIRIPVGAE-TLGRIINVIGEPIDERGPI 441
I D E + P S S +P AE L I NV+GE +D+ GP+
Sbjct: 128 IVPDSEEESLPSSPETSSTSNYDMPDLAEQNLEHIYNVLGEMVDKEGPV 176
>04_03_0863 +
20397161-20397239,20397464-20397672,20397768-20397874,
20397996-20398098,20398236-20398412,20398549-20398704
Length = 276
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 193 ELHIYHSTDNGNNLTLAFSCRF 128
ELH+ H+ +NGN LAF RF
Sbjct: 136 ELHMVHTNENGNITVLAFLYRF 157
>09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664
Length = 332
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 377 PTGIRIGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSR 252
P G++ P ++ GC P +P M + R V P A ++R
Sbjct: 40 PVGVQAAFPHAAAGCAPPPPVMPVMIVYRVVQPPPPAAHATR 81
>09_02_0625 + 11334418-11334499,11335067-11335164,11335758-11335831,
11335996-11336598,11336692-11337185,11338035-11338170,
11338417-11338488,11338581-11338652,11339078-11339226,
11340129-11340364,11340567-11340693,11341011-11341079,
11341172-11341361,11341465-11341857,11342084-11342195
Length = 968
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +3
Query: 75 NVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSVLW*MC 188
N E S+ SMP L NL+E AK LLP L+ +C
Sbjct: 920 NAELSINSMPTAS---LSNLEEYAKKSLLPAVALFALC 954
>07_03_0094 + 13335281-13335412,13337125-13337208,13337517-13338323
Length = 340
Score = 28.3 bits (60), Expect = 7.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 593 CGQNCIDYGTDQQCCQ 640
C C+ +GTD+QCC+
Sbjct: 268 CKSACLAFGTDEQCCR 283
>03_06_0527 - 34520419-34520536,34520695-34520953,34521041-34521095
Length = 143
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -3
Query: 350 ESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSRGGEID 237
E +G P P+ MA V K A+S RGG ID
Sbjct: 42 EMMSGSPLGSPAAGGMARSAPVSRSKAHASSPRGGRID 79
>03_04_0011 +
16398093-16398170,16401321-16401806,16401892-16402380,
16402810-16403466
Length = 569
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = -2
Query: 453 LVGGDGTTLVNRFADYID----DATEGF 382
L+G DG TL N AD ID DA EGF
Sbjct: 282 LIGPDGKTLNNNVADIIDEHGQDAWEGF 309
>03_02_0961 +
12759701-12760054,12760294-12760420,12760719-12761167,
12761369-12761590,12761672-12761980,12762092-12762430,
12762504-12762584,12762661-12762756,12762846-12763220,
12763400-12763531,12763962-12764132
Length = 884
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -3
Query: 440 MGPRSSIGSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWAT 261
+GP + + + RP + G+ I + P KP P + R V +PK T
Sbjct: 811 IGPDFNPAISVAALNRPAIVKKPGVVIKPIQYEEVDPHEKPDEPKRVIQRAVPNPKAKRT 870
Query: 260 SSR 252
S++
Sbjct: 871 SAK 873
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,839,366
Number of Sequences: 37544
Number of extensions: 525645
Number of successful extensions: 1604
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1604
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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