Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0837
         (817 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)               150   1e-36
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                100   3e-21
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)            30   2.6  
SB_23856| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  

>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score =  150 bits (364), Expect = 1e-36
 Identities = 70/84 (83%), Positives = 76/84 (90%)
 Frame = +1

Query: 256 LEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERG 435
           LEVAQHLGENTVRTIAMDGTEGL+RGQ  +D+G PI IPVG ETLGRIINVIGEPIDERG
Sbjct: 110 LEVAQHLGENTVRTIAMDGTEGLIRGQKCVDTGGPITIPVGPETLGRIINVIGEPIDERG 169

Query: 436 PIPTDKTAAIHAEAPEFVDMSVQQ 507
           P+ TDK AAIHAEAPEFV+MS +Q
Sbjct: 170 PVETDKRAAIHAEAPEFVEMSTEQ 193



 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 41/65 (63%), Positives = 43/65 (66%)
 Frame = +3

Query: 510 ILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTR 689
           IL TGIKVVDLLAPYA               TVLIMELINNVAKAHGGYSVFAGVG +  
Sbjct: 195 ILETGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGYQPT 254

Query: 690 EGNDL 704
              D+
Sbjct: 255 LATDM 259



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/26 (76%), Positives = 25/26 (96%)
 Frame = +2

Query: 182 DVQFEDNLPPILNALEVQNRSPRLDL 259
           DVQF+++LPPILNALEV+NR+PRL L
Sbjct: 85  DVQFDEDLPPILNALEVENRTPRLIL 110


>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 238

 Score = 99.5 bits (237), Expect = 3e-21
 Identities = 48/79 (60%), Positives = 54/79 (68%)
 Frame = +3

Query: 510 ILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTR 689
           +L TGIKV+DL+ PYA               TVLI ELINN+AK HGG SVFAGVGERTR
Sbjct: 2   VLFTGIKVIDLIEPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGHGGLSVFAGVGERTR 61

Query: 690 EGNDLYHEMIESGVISLKD 746
           EGNDL  EM+ESG+I   D
Sbjct: 62  EGNDLLREMLESGIIKYGD 80



 Score = 38.7 bits (86), Expect = 0.006
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +2

Query: 755 QGSLVYGQMNEPPGARARVAL 817
           + + V+GQMNEPPGARARVAL
Sbjct: 105 KATFVFGQMNEPPGARARVAL 125


>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
 Frame = +1

Query: 298 IAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAE 474
           + + G + L++ G  V  +G+ + +PVG E LGR+++ +G PID +GP    + A +  +
Sbjct: 12  VVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPTGGTR-ARVGVK 70

Query: 475 APEFV 489
           AP  +
Sbjct: 71  APGII 75


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 26/83 (31%), Positives = 33/83 (39%)
 Frame = -3

Query: 524 TSYENPCCTDMSTNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRIGEPES 345
           +S   P    M   SG+S+  A +L    GP SS+  P T    P    PTG+ +  P S
Sbjct: 657 SSQAQPNAPQMQGWSGSSS--AQMLPPMPGPPSSMSGPTTSRHGP---PPTGLTMNPPTS 711

Query: 344 STGCPRTKPSVPSMAMVRTVFSP 276
               P   P  P M       SP
Sbjct: 712 MGMAPMMPPPGPGMGTHPQQVSP 734


>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +1

Query: 229 GAKSISP-PRLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETL--GRI 399
           G  S+SP PR+   +     T +  +  G      GQP  D+G P     G   +  G++
Sbjct: 59  GFSSVSPGPRMLPVREYPTMTGQPASNTGQPLNNTGQPANDTGQPSS-NAGQPLINTGQL 117

Query: 400 INVIGEPIDERGP 438
           +N  GEP++  GP
Sbjct: 118 VNNTGEPVNNTGP 130


>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
          Length = 308

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 416 SPITLMMRPRV-SAPTGIRIGEPESSTG 336
           S +T   +P   SAPTGI  G+P SSTG
Sbjct: 112 STLTAFGQPSTTSAPTGISFGQPTSSTG 139


>SB_23856| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 263 TSSRGGEIDFAPQGHLESEAGYLRIAHL 180
           T S G  ID +P G +E E  +LRI H+
Sbjct: 50  TMSLGYVIDVSPDGRVEMEKDHLRITHM 77


>SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1005

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +1

Query: 250  PRLEVAQHLGEN-TVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPI 423
            P  ++A  +G N TV + A D    ++ G PVL+     ++ +   TLG     +  P+
Sbjct: 916  PETDLALVIGANDTVNSAAQDDPNSIIAGMPVLEVWKAKQVIIMKRTLGTGYADVDNPV 974


>SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 363

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 352 GSPIRIPVGAETLGRIINVIGEPIDERGPIPT 447
           G PI  P+G   +GR I  IG PI   GPI T
Sbjct: 283 GRPIGRPIGL--IGRPIGPIGRPIGPIGPIGT 312


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,313,612
Number of Sequences: 59808
Number of extensions: 568806
Number of successful extensions: 1643
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1609
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)