Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0834
(660 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55252| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 6e-12
SB_19846| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_2807| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.039
SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22) 32 0.48
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_50853| Best HMM Match : Clp1 (HMM E-Value=1.2e-14) 29 2.5
SB_732| Best HMM Match : AAA (HMM E-Value=0) 29 3.4
SB_52231| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_56902| Best HMM Match : NACHT (HMM E-Value=1.5e-10) 28 5.9
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05) 28 5.9
SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06) 28 5.9
SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06) 28 5.9
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 28 5.9
SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_55736| Best HMM Match : NACHT (HMM E-Value=3.2e-14) 28 7.7
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_55252| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 68.1 bits (159), Expect = 6e-12
Identities = 29/51 (56%), Positives = 36/51 (70%)
Frame = +3
Query: 507 VIVLEEVMEQIDLGPNGALLYCMAYLESNLDWLLNQLHGDNGTTFLFDLPG 659
+I L +VM+ + LGPNG L++CM YLE NLDWL NQL G F+FD PG
Sbjct: 35 LISLSDVMDNLKLGPNGGLIFCMEYLEKNLDWLENQLKALEGHYFVFDCPG 85
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +1
Query: 406 MSDMLKTLGRQVIIVNLDPANDTMNYKPDIDI 501
M + L LGR+V ++NLDPAND + YK +DI
Sbjct: 1 MLEFLTGLGRKVAVINLDPANDQLPYKCAVDI 32
>SB_19846| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +1
Query: 349 YGQLVLGPPGAGKTTYCIKMSDMLKTLGRQVIIVNLDPANDTMNY 483
+ QLV+GP G+GK+TYC + +T+GR V +VNLDPA + Y
Sbjct: 3 FAQLVMGPAGSGKSTYCSTIVKHCETIGRSVQVVNLDPAAEHFTY 47
>SB_2807| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 399
Score = 35.5 bits (78), Expect = 0.039
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +1
Query: 367 GPPGAGKTTYCIKMSDMLKTLGRQVIIVNLDPAN 468
GPPGAGK+T+ ML + G++V ++ +DP++
Sbjct: 128 GPPGAGKSTFIEFFGKMLTSKGQKVAVLAVDPSS 161
>SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)
Length = 455
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 358 LVLGPPGAGKTTYCIKMSDMLKTLG 432
L+ GPPG GKTT C K+ L + G
Sbjct: 55 LLTGPPGIGKTTLCSKVKQALASRG 79
>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2653
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 349 YGQLVLGPPGAGKTTYCIKMSDMLKTLGRQ 438
+G +++GP G+GKTT + + D L +L Q
Sbjct: 278 HGVMLVGPTGSGKTTNYMMLQDTLTSLHEQ 307
>SB_50853| Best HMM Match : Clp1 (HMM E-Value=1.2e-14)
Length = 351
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 358 LVLGPPGAGKTTYCIKMSDMLKTLGRQVIIVNLD 459
+V+GP GK+T C + + +GR+ I V+LD
Sbjct: 123 MVVGPTDVGKSTVCQLLLNYAVRMGRRPISVDLD 156
>SB_732| Best HMM Match : AAA (HMM E-Value=0)
Length = 388
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 352 GQLVLGPPGAGKTTYCIKMSDMLKTLGRQVI 444
G L+ GPPG GKT ++ ML T ++I
Sbjct: 184 GILLFGPPGTGKTLMARQIGTMLNTREPKII 214
>SB_52231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 432
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 301 RMSAMTNKRFKPTQTFYGQLVLGPPGAGKTTYCIKMSDMLKTLGRQV 441
R ++ ++ T++ + V GPPG GKTT+ D + R +
Sbjct: 247 RSKSIDIQKKSTTRSVFQCYVFGPPGVGKTTFLQSFLDRSPEIKRSI 293
>SB_56902| Best HMM Match : NACHT (HMM E-Value=1.5e-10)
Length = 1037
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 331 KPTQTFYGQLVLGPPGAGKTTYCIKMS 411
+P++T L+ G G GKTT+C K++
Sbjct: 131 EPSKTVRSVLLEGESGVGKTTFCQKLA 157
>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
Length = 1104
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 367 GPPGAGKTTYCIKMSDMLKTLGRQVIIVNLDPAND 471
GPPG GKTT + ++ L + + ++ L+ +ND
Sbjct: 871 GPPGTGKTTSILCLARALLGVSLKDAVLELNASND 905
>SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)
Length = 672
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 385 SQLQEDQGLIDHRRFVLV*IFYLSLLTFCIFFFEVQ 278
SQ QE LI H + L+ +FY+ + F +F+F Q
Sbjct: 535 SQPQEPNQLIKHEKD-LIRMFYIIIFVFVLFYFPYQ 569
>SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)
Length = 1532
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 367 GPPGAGKTTYCIKMSDMLKTLGRQVIIVNLDPANDTMNYK 486
GP G GKT DM K LG+ V++ N +D M+Y+
Sbjct: 923 GPAGTGKTE---TTKDMGKALGKYVVVFN---CSDQMDYR 956
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 328 FKPTQTFYGQLVLGPPGAGKTTYCI 402
F+ + +G +VLGP GAGKT CI
Sbjct: 2201 FETQRVRHGMMVLGPSGAGKTK-CI 2224
>SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 331 KPTQTFYGQLVLGPPGAGKTTYCIKMS 411
+P++T L+ G GAGKTT C K++
Sbjct: 389 EPSKTVRSVLLEGDSGAGKTTLCKKIA 415
>SB_55736| Best HMM Match : NACHT (HMM E-Value=3.2e-14)
Length = 696
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 331 KPTQTFYGQLVLGPPGAGKTTYCIKMS 411
+P++T L+ G GAGKTT C K++
Sbjct: 36 EPSKTVRSVLLEGDSGAGKTTLCKKIA 62
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 331 KPTQTFYGQLVLGPPGAGKTTYCIKMS 411
+P++T L+ G GAGKTT C K++
Sbjct: 1490 EPSKTVRSVLLEGDSGAGKTTLCKKIA 1516
>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4994
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 349 YGQLVLGPPGAGKTTYCIKMSDMLKTLG 432
+G + LGP GAGKT CI + ++K +G
Sbjct: 2202 HGMMALGPSGAGKTA-CINV--LMKAMG 2226
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,676,101
Number of Sequences: 59808
Number of extensions: 364535
Number of successful extensions: 1127
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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