Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0831
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     25   0.44 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    25   0.44 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           25   0.44 
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    25   0.44 
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    22   4.1  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   9.4  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +1

Query: 160 FVTSRDDFYSVHYIFCCSNSTMFICYSEHRSDTLRDVFGYGSTYNP 297
           ++    DF+  H+I        +  +  + S+ L + +GYG+ Y+P
Sbjct: 42  YIPPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSNGYGYGNYYHP 87


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +1

Query: 160 FVTSRDDFYSVHYIFCCSNSTMFICYSEHRSDTLRDVFGYGSTYNP 297
           ++    DF+  H+I        +  +  + S+ L + +GYG+ Y+P
Sbjct: 42  YIPPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSNGYGYGNYYHP 87


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +1

Query: 160 FVTSRDDFYSVHYIFCCSNSTMFICYSEHRSDTLRDVFGYGSTYNP 297
           ++    DF+  H+I        +  +  + S+ L + +GYG+ Y+P
Sbjct: 42  YIPPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSNGYGYGNYYHP 87


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +1

Query: 160 FVTSRDDFYSVHYIFCCSNSTMFICYSEHRSDTLRDVFGYGSTYNP 297
           ++    DF+  H+I        +  +  + S+ L + +GYG+ Y+P
Sbjct: 42  YIPPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSNGYGYGNYYHP 87


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 453 SYTLSQGPIEFIKIRSRWMEFI*IPVIRIHKSFIVRS 343
           SY LS+  I F+K+  +   F+ I      ++F++ S
Sbjct: 2   SYRLSRNDIRFLKVMYKLSHFLSITPNYDFENFVIIS 38


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 524 RLCEYTNANFRPR 486
           R C Y N N+R R
Sbjct: 12  RFCTYGNVNYRQR 24


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,204
Number of Sequences: 336
Number of extensions: 3493
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)