Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0831
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30| Best HMM Match : DNA_pol_delta_4 (HMM E-Value=2.2)              28   6.1  
SB_33651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  

>SB_30| Best HMM Match : DNA_pol_delta_4 (HMM E-Value=2.2)
          Length = 269

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/82 (23%), Positives = 34/82 (41%)
 Frame = -3

Query: 592 RTSLLSRAKPSTDDSSNFVLPVAASVSIPMPTLDPGGRSRSYHPRLQLHA*SGSNRIYQN 413
           RTS  SR++  + D +   L           ++   GR +S  PRL+    +G N     
Sbjct: 18  RTSACSRSRSCSADRTEPRLTAQERHHHRSSSVPAHGRPQSTEPRLKQSTATGQNTTITE 77

Query: 412 SQQMDGIHLNPSNQDPQEFHCT 347
             ++ G H+  S +  +   C+
Sbjct: 78  ESEVHGKHVTSSPRSGKPVGCS 99


>SB_33651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = -3

Query: 439 SGSNRIYQNSQQMDGIHLNPSNQDPQEF 356
           +G +RI++NSQ++  IH N  +Q+ QEF
Sbjct: 46  AGISRIHKNSQELTRIHKN--SQESQEF 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,569,044
Number of Sequences: 59808
Number of extensions: 427141
Number of successful extensions: 1066
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)