Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0829
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_52452| Best HMM Match : Borrelia_orfA (HMM E-Value=1.3)             28   5.4  
SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)               27   9.5  
SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)                 27   9.5  

>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1202

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = +3

Query: 537 LNENGMNDSSDDEDVPGKSIP-QKQTQTP 620
           ++EN  +++SD+ED+P K+ P QK T TP
Sbjct: 694 MDENEESETSDNEDIPSKAFPQQKFTSTP 722


>SB_52452| Best HMM Match : Borrelia_orfA (HMM E-Value=1.3)
          Length = 471

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 489 KKKEEQAQKIPAQETLLNENGMNDSSDDEDVPGKSIPQKQTQTPE 623
           KKK+E+       E+ + +    DS D+E +P K   +K+ ++ +
Sbjct: 266 KKKKEKKTNETDNESSIKKKSCEDSEDEEHLPSKEKKKKRKKSKD 310


>SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)
          Length = 654

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 489 KKKEEQAQKIPAQETLLNENGMNDSSDDED--VPGKSIPQKQTQT 617
           KK   + +K PA++   +++  +D S DED  +P KS  +  T+T
Sbjct: 47  KKAVSKEKKTPAKQESSSDDSSSDDSSDEDTKMPTKSKLKNGTKT 91


>SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)
          Length = 440

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 489 KKKEEQAQKIPAQETLLNENGMNDSSDDED--VPGKSIPQKQTQT 617
           KK   + +K PA++   +++  +D S DED  +P KS  +  T+T
Sbjct: 290 KKAVSKEKKTPAKQESSSDDSSSDDSSDEDTKMPTKSKLKNGTKT 334


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,412,647
Number of Sequences: 59808
Number of extensions: 186280
Number of successful extensions: 637
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)