Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0829
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26630.1 68417.m03837 expressed protein                             29   1.9  
At4g02040.1 68417.m00274 expressed protein                             29   3.4  
At5g11270.1 68418.m01316 expressed protein                             28   5.9  
At5g55660.1 68418.m06940 expressed protein similar to unknown pr...    27   7.8  
At5g09400.1 68418.m01089 potassium transporter family protein si...    27   7.8  
At4g18600.1 68417.m02755 expressed protein                             27   7.8  

>At4g26630.1 68417.m03837 expressed protein
          Length = 763

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/45 (33%), Positives = 29/45 (64%)
 Frame = +3

Query: 489 KKKEEQAQKIPAQETLLNENGMNDSSDDEDVPGKSIPQKQTQTPE 623
           K++EE+A++   ++   NENG+ D S+DE  P  S  +++ ++ E
Sbjct: 532 KQEEEKAEEKEEKKEEENENGIPDKSEDE-APQPSESEEKDESEE 575


>At4g02040.1 68417.m00274 expressed protein 
          Length = 152

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 80  KMQKQVPAKGKKRKANTNLVTSEPKNVKQNSLVNSDNKN 196
           + +KQ P   K   AN NLV  + K +K+   +++ NKN
Sbjct: 37  RRRKQSPTVVKSPAANPNLVMEQVKILKRGETLSAFNKN 75


>At5g11270.1 68418.m01316 expressed protein 
          Length = 354

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 101 AKGKKRKANTNLVTSEPKNVKQNSLVNSDN 190
           A+GK RK   +  +S PK  K+ SL  +DN
Sbjct: 59  ARGKNRKGFVSSSSSSPKKNKKKSLDGADN 88


>At5g55660.1 68418.m06940 expressed protein similar to unknown
           protein (pir||T08929)
          Length = 778

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +3

Query: 492 KKEEQAQKIPAQETLLNENGMNDSSDDEDVPGKSIPQKQTQTPE 623
           ++EE+ Q++  +E   NENG+ D S+DE  P  S  ++  ++ E
Sbjct: 537 EEEEKEQEVEEEEEE-NENGIPDKSEDE-APQLSESEENVESEE 578


>At5g09400.1 68418.m01089 potassium transporter family protein
           similar to K+ transporter HAK5 [Arabidopsis thaliana]
           GI:7108597; contains Pfam profile PF02705: K+ potassium
           transporter; KUP/HAK/KT Transporter family member,
           PMID:11500563; Note: possible sequencing error causes a
           frameshift in the 4th exon|15810448|gb|AY056263
          Length = 858

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 522 AQETLLNENGMNDSSDDEDVPGKSI 596
           AQE  L  +G +DS  +ED PG  +
Sbjct: 706 AQERSLESDGNDDSDSEEDFPGSRV 730


>At4g18600.1 68417.m02755 expressed protein
          Length = 1907

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 525  QETLLNENGMNDSSDDEDVPGKSIPQKQTQT 617
            ++T   EN +N++  DE +PG       T+T
Sbjct: 1252 EKTFATENSLNEAVFDEKIPGSEASTSTTET 1282



 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 525  QETLLNENGMNDSSDDEDVPGKSIPQKQTQT 617
            +E    EN +N++  DE +PG   P   T+T
Sbjct: 1291 EEPFAMENFLNEAVFDEKIPGSEAPVSTTET 1321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,516,518
Number of Sequences: 28952
Number of extensions: 137146
Number of successful extensions: 406
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)