SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0828
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   7e-14
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)                  61   9e-10
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)               60   2e-09
SB_43842| Best HMM Match : RNB (HMM E-Value=0)                         58   6e-09
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)                  57   1e-08
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)                  54   1e-07
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)            48   5e-06
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   5e-05
SB_37351| Best HMM Match : DEAD (HMM E-Value=0)                        44   8e-05
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)                42   3e-04
SB_52320| Best HMM Match : DEAD (HMM E-Value=0)                        42   4e-04
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)               38   0.007
SB_9558| Best HMM Match : DEAD (HMM E-Value=0)                         38   0.009
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.009
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.029
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)                  35   0.066
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)                  34   0.087
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.15 
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)                   33   0.27 
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)                  31   0.62 
SB_17563| Best HMM Match : DEAD (HMM E-Value=0)                        31   0.81 
SB_2247| Best HMM Match : DEAD (HMM E-Value=0)                         31   0.81 
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)                         30   1.9  
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)              29   2.5  
SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19)                29   2.5  
SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)                       28   5.7  

>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 32/89 (35%), Positives = 48/89 (53%)
 Frame = +2

Query: 245 PRLDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 424
           P    +  +PFNKNFY+ HP + K+S  E+++ R    + VSG     P   F    F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526

Query: 425 YVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
            +   ++ + Y +PT IQ Q  PIA+SGR
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGR 555



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 27/47 (57%), Positives = 40/47 (85%)
 Frame = +1

Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
           ++++G+A+TGSGKT A++ PA+VHI +QP ++ GDGPI L+ APTRE
Sbjct: 555 RDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTRE 601


>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
          Length = 690

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 27/56 (48%), Positives = 37/56 (66%)
 Frame = +2

Query: 317 RSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 484
           R  +EV+ YR + ++TV+G  V  P+  FEE+ FPDY+Q   K  G+ EPT IQAQ
Sbjct: 57  RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112



 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 22/31 (70%), Positives = 26/31 (83%)
 Frame = +1

Query: 556 YILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
           +ILP IVHIN+QP ++ GDGPI LVL PTRE
Sbjct: 113 FILPGIVHINHQPLLQPGDGPIVLVLCPTRE 143


>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
 Frame = +2

Query: 257 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQ 433
           +V  QPF K+FY   P + K +P E +E+R + E + V G     P++ + +      + 
Sbjct: 58  TVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKIL 117

Query: 434 QGVKTMGYKEPTPIQAQGWPIAMSGR 511
             +K   Y++PTPIQAQ  P+ MSGR
Sbjct: 118 DVLKKNSYEKPTPIQAQAIPVIMSGR 143


>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
          Length = 1238

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 24/47 (51%), Positives = 35/47 (74%)
 Frame = +1

Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
           ++++G+A+TGSGKTLAY LP  + +  + P   GD P+AL+L PTRE
Sbjct: 110 RDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRE 156



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/79 (30%), Positives = 39/79 (49%)
 Frame = +2

Query: 275 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 454
           F  ++YD +  V + S   V+E R  + + + G +   PI+ F + N P  +   +    
Sbjct: 32  FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91

Query: 455 YKEPTPIQAQGWPIAMSGR 511
           ++ PTPIQ Q     MSGR
Sbjct: 92  FQVPTPIQMQSLSCVMSGR 110


>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
          Length = 500

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 25/74 (33%), Positives = 41/74 (55%)
 Frame = +2

Query: 290 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 469
           Y  HPT+   +  +V++ R+  E+ V G  V +P+  F   +F + + + +   GY  PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220

Query: 470 PIQAQGWPIAMSGR 511
           PIQ Q  P+ +SGR
Sbjct: 221 PIQMQVLPVLLSGR 234


>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
          Length = 428

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 26/51 (50%), Positives = 36/51 (70%), Gaps = 4/51 (7%)
 Frame = +1

Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVLAPTRE 648
           ++++GVA+TGSGKT A+ +P +V I   P I R +    GP AL+LAPTRE
Sbjct: 139 RDIIGVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRE 189



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 21/57 (36%), Positives = 34/57 (59%)
 Frame = +2

Query: 341 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
           +R +  ++  G  +  PI+ ++EA  PD + + V  +GYK+PTPIQ Q  PI +  R
Sbjct: 83  FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNR 139


>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
          Length = 1058

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = +2

Query: 329 EVEEYRNNHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 496
           ++  +R+   + V G +V +P++ F    E   FPDY+   V+  GY  PTPIQ Q  P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196

Query: 497 AMSG 508
              G
Sbjct: 197 MAHG 200


>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 22/47 (46%), Positives = 30/47 (63%)
 Frame = +1

Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
           ++L+  AQTGSGKT AY+LP +  +  Q        P+AL +APTRE
Sbjct: 517 RDLMACAQTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRE 563



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +2

Query: 365 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
           VSG      I  F E  F + +   +   GY+ PTP+Q    PI M+GR
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGR 517


>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 688

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +1

Query: 442 KDNGLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGP 618
           +D G+       +S     Y  ++++G A+TG+GKTL++ LP +  + + +   +RG  P
Sbjct: 89  EDRGITYLFPIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAP 148

Query: 619 IALVLAPTRE 648
             LV+APTRE
Sbjct: 149 KVLVMAPTRE 158


>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1448

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 22/69 (31%), Positives = 39/69 (56%)
 Frame = +1

Query: 442 KDNGLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 621
           KD G           +A     ++L+G A+TGSGKTLA+++P +V +  +   +  +G  
Sbjct: 588 KDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVP-VVELLYKLQFKTRNGTG 646

Query: 622 ALVLAPTRE 648
            ++++PTRE
Sbjct: 647 VIIISPTRE 655


>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 22/52 (42%), Positives = 28/52 (53%)
 Frame = +2

Query: 356 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
           EV VSG      I  FEEAN  +     V+   YK+PTP+Q    PI ++GR
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 749



 Score = 36.7 bits (81), Expect = 0.016
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = +1

Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINN----QPPIRRGDGPIALVLAPTRE 648
           ++++  AQTGSGKT A++LP +  + N             P A+ +APTRE
Sbjct: 749 RDVMACAQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRE 799


>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
          Length = 185

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 22/52 (42%), Positives = 28/52 (53%)
 Frame = +2

Query: 356 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
           EV VSG      I  FEEAN  +     V+   YK+PTP+Q    PI ++GR
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 172


>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 340

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 22/47 (46%), Positives = 33/47 (70%)
 Frame = +1

Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
           ++++G A+TGSGKTLA+++P I  +  Q      DG  ALV++PTRE
Sbjct: 88  RDVLGAAKTGSGKTLAFLIPIIETLWRQKWTSM-DGLGALVISPTRE 133



 Score = 31.9 bits (69), Expect = 0.47
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 392 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
           ++ F +         G+   G+  PT IQ QG P+A+SGR
Sbjct: 49  VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGR 88


>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
          Length = 238

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 20/47 (42%), Positives = 30/47 (63%)
 Frame = +1

Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
           K+++G+A+TGSGKT A+ LP +  + + P         AL+L PTRE
Sbjct: 2   KDVIGLAETGSGKTGAFALPILQALLDNP-----QRLFALILTPTRE 43


>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 436

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = +1

Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
           ++ +G A+TGSGKT A+ LP +  + + P      G  A+VL PTRE
Sbjct: 45  RDCIGCAKTGSGKTAAFALPILQKLCDDP-----YGIFAVVLTPTRE 86


>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 697

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 15/83 (18%)
 Frame = +1

Query: 445 DNGLQRTDAHSSSRLADSYVW-KNLVGVAQTGSGKTLAYILPAIVHIN-------NQPPI 600
           D G  +     S  +  + ++ ++++G A+TGSGKTLA+ +P I HI         Q P 
Sbjct: 147 DQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQHIEAYKKRKAEQSPS 206

Query: 601 -------RRGDGPIALVLAPTRE 648
                   +G   +AL++APTRE
Sbjct: 207 DKESDLESQGYPLLALIMAPTRE 229


>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 19/47 (40%), Positives = 29/47 (61%)
 Frame = +1

Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
           K++V +A+TGSGKT A+++P    +          G  AL+L+PTRE
Sbjct: 319 KDVVAMARTGSGKTAAFLIPMFEKLQTH---TAKVGIRALILSPTRE 362


>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
          Length = 978

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
 Frame = +1

Query: 511 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRG-----DGPIALVLAPTRE 648
           +++  AQTGSGKTLAY+ P +VH   +   R G       P A ++ P RE
Sbjct: 417 HVICAAQTGSGKTLAYLAP-LVHRLREDEERHGILARLKRPRACIVVPARE 466


>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
          Length = 456

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +1

Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR---GDGPIALVL 633
           +++ GVA  GSGK LAY+LP I  I      +     +GP+ L+L
Sbjct: 225 RDVAGVAIEGSGKRLAYLLPIIHQITESSVYQELPLANGPLVLIL 269


>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +1

Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRG-DGPIALVLAPTRE 648
           ++++  AQ+G+GKT  + +  +  I+     + G D   ALVLAPTRE
Sbjct: 123 RDVIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRE 170


>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
          Length = 96

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 18/57 (31%), Positives = 32/57 (56%)
 Frame = +1

Query: 478 SSRLADSYVWKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
           +S +  + + K++   A TG+GKT A++LP +  +  +P   +      LV+ PTRE
Sbjct: 38  ASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRP--TQSPAIRVLVITPTRE 92



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 434 QGVKTMGYKEPTPIQAQGWPIAMSGR 511
           + V  +G+  PTPIQA   P+A+ G+
Sbjct: 23  RAVNELGFLHPTPIQASTIPVALMGK 48


>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +1

Query: 508  KNLVGVAQTGSGKTLAYILPAIVHINNQPP 597
            ++L+  AQTGSGKT A+++P +  I  + P
Sbjct: 913  RDLMACAQTGSGKTAAFLIPILSRIYMEGP 942



 Score = 31.1 bits (67), Expect = 0.81
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 392 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
           I  FE+ +  + +   V   GYK+PTP+Q    PI    R
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKR 913


>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 20/66 (30%), Positives = 35/66 (53%)
 Frame = +1

Query: 451 GLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 630
           G ++  A     +      ++++  AQ+G+GKT  + +  +  I+ Q  +R    P ALV
Sbjct: 16  GFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQ--LRE---PQALV 70

Query: 631 LAPTRE 648
           L+PTRE
Sbjct: 71  LSPTRE 76


>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
          Length = 559

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = +1

Query: 436 RCKDNGLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG 615
           + K  G+ +        L   +  K+L+  ++TG+GK+L ++LP++     Q P  RG G
Sbjct: 174 KLKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSV-----QDP-GRGYG 227

Query: 616 PIALVLAPTRE 648
            I  ++ PTRE
Sbjct: 228 TI--IVVPTRE 236


>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 439

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGRI*LA*RKRVPAK 547
           FE+      +  G+   G+ +P+PIQ +  P+A++GR  LA  K    K
Sbjct: 49  FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +1

Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
           ++++  A+ G+GKT AY++P +   +      +     ALVL PTRE
Sbjct: 85  RDILARAKNGTGKTAAYLVPLLERTDTTKNCIQ-----ALVLVPTRE 126


>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 439

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGRI*LA*RKRVPAK 547
           FE+      +  G+   G+ +P+PIQ +  P+A++GR  LA  K    K
Sbjct: 49  FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +1

Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
           ++++  A+ G+GKT AY++P +   +      +     ALVL PTRE
Sbjct: 85  RDILARAKNGTGKTAAYLVPLLERTDTTKNCIQ-----ALVLVPTRE 126


>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 480

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 377 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 490
           ++H P++   +  FP Y +       Y  P P QA  W
Sbjct: 6   DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43


>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
          Length = 675

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 287 FYDPHPTVLKRSPYEVEEYRNN--HEVTVSGVEVHNPIQYFEEANFPDY 427
           + D    VL     E EE  NN  H++ +  + +HNP  YFE+ +  DY
Sbjct: 217 YRDEDDGVLVPIEQEAEEEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264


>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
          Length = 490

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +1

Query: 487 LADSYVWKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
           LAD  V  N++  +Q+G+GKT A++L  +  ++   P      P  + L+PT E
Sbjct: 138 LADPPV--NMIAQSQSGTGKTAAFVLTMLSRVDATKPY-----PQVICLSPTYE 184



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +2

Query: 353 HEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 505
           HEV V   +  +P+   + FEE      +++GV  MG+ +P+ IQ    P+ ++
Sbjct: 86  HEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLA 139


>SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19)
          Length = 493

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -3

Query: 180 YCHRCQIEKNYRRICCLL----QIWNHRFHGYYSSYQT*LFF 67
           +CHR Q   NY   C ++    Q+W+H +    SS ++ +F+
Sbjct: 178 FCHRQQYRHNYYNSCLVITFFRQMWDHLWANVGSSVESSVFY 219


>SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)
          Length = 346

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
 Frame = +2

Query: 230 SEHASPRLDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ---- 397
           SE AS    S SLQ  N N  DP    L R+  +    R   +VT    ++  P Q    
Sbjct: 239 SEGASLMKLSTSLQSLNTNIKDPRAAFLNRTKIKDLLVRTITKVTFLQQQIAQPRQLTLT 298

Query: 398 -YFEEANFPDYV----QQG--VKTMGYKEPTPIQAQG 487
            YF E +  DYV    Q G    + G   P+P  + G
Sbjct: 299 KYF-ETDSSDYVVELLQDGSAANSKGSDTPSPASSGG 334


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,444,603
Number of Sequences: 59808
Number of extensions: 405509
Number of successful extensions: 1105
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -