Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0826
(738 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21461| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 31 1.3
SB_41722| Best HMM Match : Extensin_2 (HMM E-Value=0.35) 31 1.3
SB_51054| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05) 29 3.9
SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083) 29 3.9
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_18957| Best HMM Match : zf-TAZ (HMM E-Value=3.7) 29 5.2
SB_25393| Best HMM Match : Collagen (HMM E-Value=0.00015) 29 5.2
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 28 9.1
SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05) 28 9.1
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 28 9.1
SB_55443| Best HMM Match : Homeobox (HMM E-Value=2.3e-26) 28 9.1
SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_9960| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_21461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 33.9 bits (74), Expect = 0.14
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYPTGP 731
PP +A P PPPN+ + PPP + G P P
Sbjct: 14 PPNTAIPGDPPPNTT-IPRAPPPNTAIPGDRPPNTP 48
Score = 31.1 bits (67), Expect = 0.97
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVSNTPP--PYPG 701
PP + P PPPN+ N PP P PG
Sbjct: 74 PPNTPIPGDPPPNTPIPGNPPPNTPIPG 101
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYPTGP 731
PP + P PPPN + + PPP + G P P
Sbjct: 44 PPNTPIPGDPPPN-IPIPGNPPPNTPIPGDPPPNTP 78
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYP 722
PP +A P PPPN+ + PPP + A P
Sbjct: 4 PPNTAIPGDPPPNTA-IPGDPPPNTTIPRAPPP 35
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVSNTPP--PYPGVTGASYPTGPG 734
PP + P PPPN+ + PP P PG + P PG
Sbjct: 24 PPNTTIPRAPPPNTAIPGDRPPNTPIPGDPPPNIPI-PG 61
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYPTGP 731
PP + P PPPN+ + PPP + G P P
Sbjct: 64 PPNTPIPGDPPPNTP-IPGDPPPNTPIPGNPPPNTP 98
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYPTGP 731
PP + P PPPN+ + PPP + G P P
Sbjct: 84 PPNTPIPGNPPPNTP-IPGDPPPNTPIPGDPPPNTP 118
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYPTGP 731
PP +P PPPN+ + PPYP A YP P
Sbjct: 111 PPNPPYP--PPPNAPYPPPPNPPYPPPPNAPYPPSP 144
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYPTGP 731
P Y P+ PPPN+ + PPPYP YP P
Sbjct: 159 PLYPPPPNPPPPNAPY---PPPPYPPPPNPPYPPPP 191
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +3
Query: 627 PYSAFPDQPPPNSVFVSNTPPPYPGVTGASYPTGP 731
PY P PPPN + PPYP A P P
Sbjct: 173 PYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPP 207
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYPTGP 731
PP + +P PPPN + PYP A YP P
Sbjct: 119 PPNAPYP--PPPNPPYPPPPNAPYPPSPNAPYPPPP 152
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYPTGP 731
PPY P+ P P S PPP P YP P
Sbjct: 130 PPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPP 165
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Frame = +3
Query: 624 PPYSAFPDQPP----PNSVFVSNTPPPYPGVTGASYPTGP 731
PPY +P PP PN + PYP YP P
Sbjct: 97 PPYPPYPPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPP 136
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVS--NTPPPYPGVTGASYPTGP 731
PP P PPPN + PPP P A YP P
Sbjct: 141 PPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPP 178
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 33.1 bits (72), Expect = 0.24
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYPTGPG 734
PP + P QPPP N PPP P G++ P G G
Sbjct: 936 PPGGSAPSQPPPPG---GNAPPPPPPPGGSAPPPGGG 969
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYPTGPG 734
PP + P PPP PPP PG + S P PG
Sbjct: 914 PPGGSVPPPPPPPGGNAPLPPPP-PGGSAPSQPPPPG 949
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYPTGP 731
PPY A P P P + PP +PG G + P GP
Sbjct: 33 PPYEAPPPPPGPPG---PDGPPGFPGPQGPNGPKGP 65
>SB_41722| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
Length = 343
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 621 VPPYSAFPDQPPPNSVFVSNTPPPYPGVTGA 713
+PP++A P+Q PPN+ P P+P V A
Sbjct: 144 IPPWTA-PEQEPPNNTPPWTAPEPFPPVDSA 173
>SB_51054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 621 VPPYSAFPDQPPPNSVFVSNTPPPYPGVTGA 713
+PP++A P+Q PPN P P+P V A
Sbjct: 67 IPPWTA-PEQEPPNHTPPWTAPEPFPPVDSA 96
>SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05)
Length = 288
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Frame = +3
Query: 621 VPPYSAFPDQP----PPNSVFVSNTPPPYPGVTGASYPT-GPG 734
+PP +A P P PP + + PPP P T A PT PG
Sbjct: 211 LPPTAAPPPPPTTGAPPPTPVTNKPPPPRPATTQAPPPTAAPG 253
>SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
Length = 440
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +3
Query: 639 FPDQPPPNSVFVSNTPPPYPGVTGASYPTGP 731
F QPP S V + PP PG G + PTGP
Sbjct: 368 FMQQPPTLSQGVPYSMPPRPGAPG-TMPTGP 397
>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYP 722
PP S P PPP ++ + PPP P T A P
Sbjct: 322 PPPSQAP--PPPKTIPSTLPPPPVPSATSAPPP 352
>SB_18957| Best HMM Match : zf-TAZ (HMM E-Value=3.7)
Length = 117
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 134 HADHGVLIHAGECIILFSDNVSVEFYGNDT 223
H D V++H G+C+I D +V G T
Sbjct: 27 HDDQCVIVHGGQCMIAHGDRCTVSHSGRCT 56
>SB_25393| Best HMM Match : Collagen (HMM E-Value=0.00015)
Length = 391
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 684 PPPYPGVTGASYPTGP 731
PP YPG+ G PTGP
Sbjct: 82 PPGYPGIPGQKGPTGP 97
>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1252
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 424 GEVKFKLTFKSGGAIEYGQAMLKAAHL 504
GEVK + K+G I+YG+ +L+ +HL
Sbjct: 378 GEVKDQGKVKAGDVIKYGKPVLRQSHL 404
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVSNTPPPYPG 701
PP +A P PPP+ V PPP G
Sbjct: 312 PPLNATPPPPPPSRDQVPLPPPPLRG 337
>SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05)
Length = 449
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYPT 725
PP P P + +TP P+ G+ G +Y T
Sbjct: 216 PPKGIMGSTPNPPKGIMGSTPNPHKGIMGKNYRT 249
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVSNTPPPYPG 701
PP +A P PPP+ V PPP G
Sbjct: 224 PPLNATPPPPPPSRDQVPLPPPPLRG 249
>SB_55443| Best HMM Match : Homeobox (HMM E-Value=2.3e-26)
Length = 245
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGAS 716
PP +P PP +F S+ PP YPG+ +S
Sbjct: 189 PPPPMYPAFPP---IFPSSPPPEYPGLPVSS 216
>SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGAS 716
PP +P PP +F S+ PP YPG+ +S
Sbjct: 189 PPPPMYPAFPP---IFPSSPPPEYPGLPVSS 216
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYPTGPG 734
PP A PPP PPP G G P G G
Sbjct: 570 PPPGAGQGGPPPPGAGQEGPPPPGAGQGGGPPPPGAG 606
>SB_9960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 624 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYPTGPGF 737
PP + F D+ P + P + G+TG S+ + P F
Sbjct: 52 PPRAFFFDESP----YAETAPSSHSGITGVSFKSAPSF 85
>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 219 IHQSLRGSRRDGVPHYS*NDLQFKEEY 299
+H SL+ DG+PH N LQF E Y
Sbjct: 1031 VHISLQELGSDGIPHIVANCLQFIETY 1057
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,695,205
Number of Sequences: 59808
Number of extensions: 466535
Number of successful extensions: 1858
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1788
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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