Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0822
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)              84   7e-17
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)             84   9e-17
SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   5e-14
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                      72   3e-13
SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   1e-07
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        30   1.2  
SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)                   29   3.5  
SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.7  
SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_34997| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_43369| Best HMM Match : S-antigen (HMM E-Value=2.4)                 27   8.2  
SB_17982| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 34/73 (46%), Positives = 55/73 (75%)
 Frame = +1

Query: 283 EETKXSEDKLNMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQTGESKVFYYKMKGDYH 462
           EE       L +++ Y++ +EKEL+D+C ++LG+L++ LIP ++  E+KVFY+K+KGDY+
Sbjct: 147 EEKTAESSSLAIVKKYKACIEKELKDLCKEVLGILER-LIPGAEDEENKVFYFKLKGDYY 205

Query: 463 RYLAEFATGNDRK 501
           RYLAEF+ G + K
Sbjct: 206 RYLAEFSHGQEHK 218



 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 33/62 (53%), Positives = 45/62 (72%)
 Frame = +2

Query: 68  MSEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARR 247
           M  RE  +Y AKL+EQ +RYDEM + MK V+ +     +L+ EERNLLSV+YKN++G RR
Sbjct: 81  MVVRETLIYNAKLSEQCDRYDEMAKIMKEVSEKYP---KLSKEERNLLSVSYKNIVGQRR 137

Query: 248 AS 253
           +S
Sbjct: 138 SS 139


>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
          Length = 251

 Score = 83.8 bits (198), Expect = 9e-17
 Identities = 42/62 (67%), Positives = 51/62 (82%)
 Frame = +2

Query: 68  MSEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARR 247
           M+++E++VY AKLAEQAERYD+MV +MK VA       EL+ E+RNLLSVAYKNVIGARR
Sbjct: 1   MADKEEHVYMAKLAEQAERYDDMVNSMKEVAKMG---TELSTEDRNLLSVAYKNVIGARR 57

Query: 248 AS 253
           AS
Sbjct: 58  AS 59



 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 33/59 (55%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
 Frame = +1

Query: 274 EQKEETKXSE-DKLNMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQTGESKVFYYKM 447
           EQKEE+K  +  KL MIR YR  +E+EL+ IC +IL +LD  LI +SQ+ ESKVFY K+
Sbjct: 67  EQKEESKGEDMAKLEMIRNYRKTIEEELKTICGEILSLLDDSLIKNSQSEESKVFYNKI 125


>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 74.5 bits (175), Expect = 5e-14
 Identities = 33/78 (42%), Positives = 50/78 (64%)
 Frame = +1

Query: 280 KEETKXSEDKLNMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQTGESKVFYYKMKGDY 459
           +++ + SE K      YR  +E EL ++C  +L +L+  LIP++Q+ ESKVFY KMKGDY
Sbjct: 45  EQKLEGSERKKQNTETYRQTIENELNEVCETVLKLLESKLIPNAQSTESKVFYLKMKGDY 104

Query: 460 HRYLAEFATGNDRKEAAR 513
           +RY  E A  + R+E  +
Sbjct: 105 YRYEGEVAGADRRREVVQ 122



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 23/40 (57%), Positives = 29/40 (72%)
 Frame = +2

Query: 134 MVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRAS 253
           M +AMK      +S+  L  EERNLLSVAYKNV+GA+R+S
Sbjct: 1   MAKAMKEATE--ISET-LEQEERNLLSVAYKNVVGAKRSS 37


>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
 Frame = +1

Query: 286 ETKXSEDKLNMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQTG---ESKVFYYKMKGD 456
           E K  E+   + + YR  +  EL   C+++L +L+ YL+   Q     E+KVFY KM+GD
Sbjct: 74  EQKAPEEMAALTKKYREDITNELNGKCAEVLDILENYLLKDGQDDINTEAKVFYLKMRGD 133

Query: 457 YHRYLAEFATGNDRKE 504
           YHRYL E A G+ RKE
Sbjct: 134 YHRYLVEVAEGDSRKE 149



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 36/59 (61%), Positives = 44/59 (74%)
 Frame = +2

Query: 77  REDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRAS 253
           RE+ ++ AK+AEQAERYD+MV AM  V       N+   EERNLLSVAYKNV+GARR+S
Sbjct: 11  REELIHLAKMAEQAERYDDMVNAMSAVTKEGKPLND---EERNLLSVAYKNVVGARRSS 66


>SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
 Frame = +2

Query: 50  NHLSSTMS---EREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVA 220
           NH S  +     R + V  AKLAEQ ER+++++  MK     N S N+   E RNLLSV 
Sbjct: 178 NHPSGVVQMQDSRNELVQLAKLAEQTERFEDVILYMKKAIEINPSLNK---EHRNLLSVG 234

Query: 221 YKNVIGARR 247
           YKNV+G++R
Sbjct: 235 YKNVVGSKR 243


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/39 (28%), Positives = 26/39 (66%)
 Frame = +1

Query: 277  QKEETKXSEDKLNMIRAYRSQVEKELRDICSDILGVLDK 393
            Q++E + +++K+N + AY++  E++LR+   D++    K
Sbjct: 2029 QEQELQSAKNKINRLEAYKTSYEEKLRNQQEDLVAAQQK 2067


>SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = -2

Query: 212 TAGSSPPLSAHCRTRCVMLHSSSPPPFRHSAQPAQLTLLYTHYLPFP 72
           TA S PP +A C T C   +   P P      P   T L  H LP P
Sbjct: 40  TALSPPPATALCPTPC---YGPVPHPLLRPCVPPPATALVPHPLPRP 83


>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
          Length = 237

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -2

Query: 152 SSSPPPFRH-SAQPAQLTLLYTHYLPFPTLWMTNDFTLTKSESPGHLF 12
           +S P P+   S QPA  T  YT Y P  T+      T   + SP   F
Sbjct: 73  ASQPAPYTPASGQPASYTPAYTPYTPASTVGRMPPTTSQSTPSPAPFF 120


>SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1792

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +2

Query: 65  TMSEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAY 223
           T+SERE    KA++   A    E   A  ++A +  ++NE  +E R+L  +A+
Sbjct: 788 TISEREAIANKARIRSGALTLSETGPAFVDLALKVPAENEEKLENRDLEEMAW 840


>SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 83  DNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLL 211
           D VY+  L     RY+E+V  + N   +   +N  TV +R ++
Sbjct: 80  DEVYRPYLTTDETRYNEVVFVVDNTVYQRYHNNTKTVTDRVII 122


>SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1409

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 83  DNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEER 202
           D VY+  L     RY EMV  + N   +   +N  TV ++
Sbjct: 170 DEVYRPYLTTDETRYTEMVFVVDNTVYQRYQNNTKTVTDK 209


>SB_34997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 404 GMRYLSRTPRMSEQMSRSSFSTWLRYALIMFNLSSDXFVSSFCSMEE 264
           G R   RTP ++  +   S  +W  YALI+F+L    F+   C++ E
Sbjct: 77  GSRLKGRTPHLTRALM--SILSWSEYALILFSL----FIGVACNILE 117


>SB_43369| Best HMM Match : S-antigen (HMM E-Value=2.4)
          Length = 407

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
 Frame = +1

Query: 280 KEETKXSEDKLNMIR-AYRSQVEKELRDICSDILGVLDKYLIPSSQTGESKVFYYKM--- 447
           K+ T  S +K      ++ SQV   L  I  D + + D++L+ + ++ ES   Y KM   
Sbjct: 15  KKTTAESREKTTYAAPSWGSQVLPHLHPIMPDRMYLQDQHLLIAVKSVESDESYGKMKKS 74

Query: 448 ---KGDYHRYLAEFATGNDRKEAAR 513
              K    + +   + GNDR+ + R
Sbjct: 75  GKGKESKTKRMLHISQGNDRRNSTR 99


>SB_17982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 474

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 373 ILGVLDKYLIPSSQTGESKVFYYKMKGDYHRYLAEFAT 486
           ++GV D +     ++GE  +FYY +K   HR+   F T
Sbjct: 1   MVGVDDDWFAYQCKSGEV-LFYYNVKSGEHRWAIHFCT 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,471,968
Number of Sequences: 59808
Number of extensions: 307049
Number of successful extensions: 831
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)