Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0819
         (728 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    39   0.11 
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    35   1.8  
UniRef50_A0CTU7 Cluster: Chromosome undetermined scaffold_27, wh...    33   5.4  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 39.1 bits (87), Expect = 0.11
 Identities = 18/23 (78%), Positives = 20/23 (86%)
 Frame = +3

Query: 408 LLLRWVDELTAHLVLSGTRAHRY 476
           LLLRWVDELTAHLVLSG  + R+
Sbjct: 155 LLLRWVDELTAHLVLSGYWSPRH 177


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +1

Query: 598 WYLPVRTHKRSYHQ 639
           WYLP RTHKRSYH+
Sbjct: 572 WYLPARTHKRSYHR 585


>UniRef50_A0CTU7 Cluster: Chromosome undetermined scaffold_27, whole
            genome shotgun sequence; n=6; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_27, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 1430

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 318  NNLDNHQQRHLPGSFANLNHPGATQTHTKKIIQIN 214
            NNL NHQ  HLPG  A L   G+ Q    K++ ++
Sbjct: 1305 NNLPNHQPSHLPGLTARLPSMGSPQCQYVKLLLVD 1339


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 734,640,019
Number of Sequences: 1657284
Number of extensions: 15057847
Number of successful extensions: 30219
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30218
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)