Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0816
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)                  30   1.5  
SB_40906| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)                     29   3.5  
SB_17622| Best HMM Match : zf-CCHC (HMM E-Value=0.3)                   29   4.6  
SB_377| Best HMM Match : IQ (HMM E-Value=0.0002)                       29   4.6  
SB_29028| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_59327| Best HMM Match : DUF919 (HMM E-Value=6.3)                    28   6.1  

>SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)
          Length = 553

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +3

Query: 309 ALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESRS 488
           ++N+  +     +N I +  NS      +  D D SI   D   + NDN ++Y +  S  
Sbjct: 290 SINDNDNSINDNDNSIYDNDNSINDNDNSINDNDNSINDNDNSIYDNDNSSIYDNDNSIY 349

Query: 489 ENSGT 503
           +N  +
Sbjct: 350 DNDNS 354


>SB_40906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 312 LNERKSQDKHTENLIPNLT-NSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKES 482
           ++E + +D+ T N  P L  N  KSY    I   E  ++ ++ +  +  G+L   KES
Sbjct: 41  VDENEPKDEETANQTPTLKDNDEKSYYKVDIPSSEQRITVEERSDDSTRGHLGSPKES 98


>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
          Length = 2440

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 267 PSQIPEHRDP--QDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDES 416
           P ++  H+DP   +  + +E +       +   +LT+ H+S   TG+DK+E+
Sbjct: 208 PERLSTHQDPGVDEGKSRSETELNSARKNSSEVHLTDLHRSQSLTGLDKNEA 259


>SB_17622| Best HMM Match : zf-CCHC (HMM E-Value=0.3)
          Length = 374

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
 Frame = +3

Query: 267 PSQIPEHRDPQDY--------TALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIV 422
           P+ I  HR PQ+         T   ++++  KHTE  +    N+  S+  T   + + ++
Sbjct: 75  PTPIQTHRKPQERIHNVLLTKTEAQKKEALVKHTEKKVCPYHNNAASHNLTECKRFKELL 134

Query: 423 SQDKVAFTNDNG 458
            ++++ F   NG
Sbjct: 135 YEERLEFLKSNG 146


>SB_377| Best HMM Match : IQ (HMM E-Value=0.0002)
          Length = 1376

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +3

Query: 300 DYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKE 479
           D   L+ + SQ +  +       N H S+   G+D  E++ S+D+ + T         KE
Sbjct: 715 DNCELSSKSSQPESEQVRESKTHNEHVSHAPDGLDTQETVGSKDEDSITERKKT--DQKE 772

Query: 480 SRSENS 497
             SE+S
Sbjct: 773 GNSESS 778


>SB_29028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 714

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 479 ISFRKLR-NLNQDTVPKIIYVQTDGLQDNQLYQVAGSSGDSIIMS 610
           +  RKL  NL+    PK++  QTD  +D  +  +   SG ++  S
Sbjct: 216 LPLRKLSSNLSMHDDPKVMKNQTDSFEDTTISLIGSKSGTTLFQS 260


>SB_59327| Best HMM Match : DUF919 (HMM E-Value=6.3)
          Length = 293

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 479 ISFRKLR-NLNQDTVPKIIYVQTDGLQDNQLYQVAGSSGDSIIMS 610
           +  RKL  NL+    PK++  QTD  +D  +  +   SG ++  S
Sbjct: 97  LPLRKLSSNLSMHDDPKVMKNQTDSFEDTTISLIGSKSGTTLFQS 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,957,467
Number of Sequences: 59808
Number of extensions: 413137
Number of successful extensions: 1224
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)