Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0816
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ...    29   2.8  
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ...    29   2.8  
At4g26770.1 68417.m03856 phosphatidate cytidylyltransferase, put...    29   2.8  
At5g22720.1 68418.m02654 F-box family protein contains F-box dom...    29   3.8  
At2g33850.1 68415.m04155 expressed protein contains 1 transmembr...    28   5.0  
At1g79940.1 68414.m09342 DNAJ heat shock N-terminal domain-conta...    28   5.0  
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    28   5.0  
At3g13400.1 68416.m01685 multi-copper oxidase type I family prot...    28   6.6  
At1g54740.1 68414.m06242 expressed protein                             27   8.7  
At1g02040.1 68414.m00124 zinc finger (C2H2 type) family protein ...    27   8.7  

>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
           protein contains similarity to RNA-binding protein;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 420

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 258 VENPSQIPEHRDPQDYTALNERKSQDKHTENL 353
           V+  S +PE RDP+ +T L E   +D   EN+
Sbjct: 178 VKRLSPLPEIRDPKIFTVLVENLPEDHSNENI 209


>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
           protein contains similarity to RNA-binding protein;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 422

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 258 VENPSQIPEHRDPQDYTALNERKSQDKHTENL 353
           V+  S +PE RDP+ +T L E   +D   EN+
Sbjct: 178 VKRLSPLPEIRDPKIFTVLVENLPEDHSNENI 209


>At4g26770.1 68417.m03856 phosphatidate cytidylyltransferase,
           putative / CDP-diglyceride synthetase, putative similar
           to CDP-diacylglycerol synthetase GI:2182104 from
           [Solanum tuberosum]
          Length = 471

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 264 NPSQIPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYT 395
           N  +I + RD    T    R + +   +N  PN+ NS + Y YT
Sbjct: 10  NSPRIRKLRDTSYPTTPTSRMNTNNQRDNHYPNIPNSPRDYNYT 53


>At5g22720.1 68418.m02654 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 422

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 390 YTGIDKDESIVSQDKVAFTNDNGNLYQSKESRSENSGTSTRI 515
           Y  +DK E ++   ++ + N   + Y+SK  R  NSG+ T++
Sbjct: 234 YLDLDKSEVLIDATRLKYLNLEADQYESKTIR--NSGSLTKV 273


>At2g33850.1 68415.m04155 expressed protein contains 1 transmembrane
           domain; similar to Protein E6 (Swiss-Prot:Q01197)
           [Gossypium hirsutum]
          Length = 267

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +3

Query: 279 PEHRDPQDYTAL--NERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTND 452
           P+ ++P +   +  NE+K  D      IP   N +  YG+   D +   ++ +K    N 
Sbjct: 39  PKEQNPNNLVPIETNEKKEPDDQNPAFIPQSENGYGLYGHETTDNNNEELNNNKYE-DNV 97

Query: 453 NGNLYQSKESRSENSGT 503
           N +   S  S SE + T
Sbjct: 98  NYDDSFSTPSLSETAQT 114


>At1g79940.1 68414.m09342 DNAJ heat shock N-terminal
           domain-containing protein / sec63 domain-containing
           protein similar to SP|Q9UGP8 Translocation protein SEC63
           homolog {Homo sapiens}; contains Pfam profiles PF00226
           DnaJ domain, PF02889 Sec63 domain
          Length = 702

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 402 DKDESIVSQDKVAFTNDNGNLYQSKESRSENSGT 503
           D+DE     +K      NG++ Q KES SE SG+
Sbjct: 666 DEDEKKDMDEKRGSKKANGSVKQKKESSSEESGS 699


>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/69 (21%), Positives = 28/69 (40%)
 Frame = +3

Query: 294 PQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQS 473
           P  +   N   +Q + ++N+ P   N H+ Y         S  S     + +   N  ++
Sbjct: 88  PNQHRRYNAPDNQHQRSDNIGPPQPNQHRRYNAPDNQHQRSDNSGPPQPYRHRRNNAPEN 147

Query: 474 KESRSENSG 500
           +  RS+N G
Sbjct: 148 QHQRSDNIG 156


>At3g13400.1 68416.m01685 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 551

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = -1

Query: 300 LEGRDVLVSDLDSRRSKVMRYFMVSSFYD*VSKIWNVVASTR 175
           +EG  VL +D DS    V + F V    D V+K + +VASTR
Sbjct: 243 MEGSHVLQNDYDSLDVHVGQCFAVLVTADQVAKNYYMVASTR 284


>At1g54740.1 68414.m06242 expressed protein
          Length = 280

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 181 HQENLHHNNHSRFRSHI 131
           H EN HH+ H R R HI
Sbjct: 241 HDENNHHHYHHRHRHHI 257


>At1g02040.1 68414.m00124 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 324

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +3

Query: 207 RPNHRKTKP*STS*PSNVENPSQIPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHK 380
           R +H+K K    S     E   +  E  D  D     E   +DK T ++    +N+H+
Sbjct: 169 RASHKKVKGCFASQDKEEEEEEEYKEDDDDNDEDEDEEEDEEDKSTAHIARKRSNAHE 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,065,580
Number of Sequences: 28952
Number of extensions: 287142
Number of successful extensions: 731
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)